Mercurial > repos > scottx611x > qualimap2_bamqc

diff qualimap_bamqc.py @ 10:4e5e0a116434 draft

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planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty
author scottx611x
date Thu, 26 Jul 2018 12:14:12 -0400
parents 5b36882f6455
children cefa83db3ebf
line wrap: on
line diff
--- a/qualimap_bamqc.py	Thu Jul 26 11:44:20 2018 -0400
+++ b/qualimap_bamqc.py	Thu Jul 26 12:14:12 2018 -0400
@@ -29,11 +29,11 @@
     )
     parser.add_argument('--input_file')
     parser.add_argument('--out_genome_file', default="genome_coverage.txt")
-    parser.add_argument('--out_dir')
+    parser.add_argument('--out_dir', default="qualimap_results")
     parser.add_argument('--java_mem_size', default="8G")
 
     args = parser.parse_args()
-    
+
     qualimap_bamqc(
         args.input_file,
         args.out_genome_file,