diff qualimap_bamqc.py @ 39:2284e9b4c6b2 draft

planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

--- a/qualimap_bamqc.py	Fri Jul 27 11:36:49 2018 -0400
+++ b/qualimap_bamqc.py	Fri Jul 27 11:42:35 2018 -0400
@@ -43,24 +43,21 @@
         args.java_mem_size
     )
 
-    print(os.listdir(output_dir))
-
     shutil.make_archive(
         'raw_data_qualimapReport',
         'zip',
         args.out_dir + '/raw_data_qualimapReport'
     )
 
+    shutil.move("raw_data_qualimapReport.zip", os.path.join(output_dir, file_name)
+
     [
-        shutil.move(file_name, os.path.join(output_dir, file_name))
+        shutil.move(os.path.join(args.out_dir, file_name), os.path.join(output_dir, file_name))
         for file_name in [
             "genome_results.txt",
-            "qualimapReport.html",
-            "raw_data_qualimapReport.zip"
+            "qualimapReport.html"
         ]
     ]
-
-    print(os.listdir(output_dir))
-
+    
 if __name__ == "__main__":
     main()