comparison qualimap_bamqc.py @ 40:98944e914637 draft

planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty
author scottx611x
date Fri, 27 Jul 2018 11:45:23 -0400
parents 2284e9b4c6b2
children e856fda6f375
comparison
equal deleted inserted replaced
39:2284e9b4c6b2 40:98944e914637
47 'raw_data_qualimapReport', 47 'raw_data_qualimapReport',
48 'zip', 48 'zip',
49 args.out_dir + '/raw_data_qualimapReport' 49 args.out_dir + '/raw_data_qualimapReport'
50 ) 50 )
51 51
52 shutil.move("raw_data_qualimapReport.zip", os.path.join(output_dir, file_name) 52 shutil.move(
53 "raw_data_qualimapReport.zip",
54 os.path.join(output_dir, "raw_data_qualimapReport.zip")
55 )
53 56
54 [ 57 [
55 shutil.move(os.path.join(args.out_dir, file_name), os.path.join(output_dir, file_name)) 58 shutil.move(
56 for file_name in [ 59 os.path.join(args.out_dir, file_name),
57 "genome_results.txt", 60 os.path.join(output_dir, file_name)
58 "qualimapReport.html" 61 )
59 ] 62 for file_name in ["genome_results.txt", "qualimapReport.html"]
60 ] 63 ]
61 64
62 if __name__ == "__main__": 65 if __name__ == "__main__":
63 main() 66 main()