comparison qualimap_bamqc.py @ 26:241f81fdff98 draft

planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty

25:e985769ec0ac

#!/usr/bin/env python
from __future__ import print_function
import argparse
from subprocess import check_call, CalledProcessError
import shutil
import sys


def qualimap_bamqc(bam_filename, genomecov_file, jv_mem_size):

        args.out_genome_file,
        args.java_mem_size
    )

    shutil.make_archive(
        'raw_data_qualimapReport.zip',
        'zip',
        './raw_data_qualimapReport'
    )


if __name__ == "__main__":
    main()

26:241f81fdff98

#!/usr/bin/env python
from __future__ import print_function
import argparse
from subprocess import check_call, CalledProcessError
import os
import shutil
import sys


def qualimap_bamqc(bam_filename, genomecov_file, jv_mem_size):

        args.out_genome_file,
        args.java_mem_size
    )

    shutil.make_archive(
        'raw_data_qualimapReport',
        'zip',
        os.path.join(os.get_cwd(), 'raw_data_qualimapReport')
    )


if __name__ == "__main__":
    main()