Mercurial > repos > scottx611x > qualimap2_bamqc
comparison qualimap_bamqc.py @ 33:0ea51e29a0ce draft
planemo upload for repository https://github.com/scottx611x/qualimap2 commit dc78b7c4b1780b316ca4aba2be247969ac1100ec-dirty
| author | scottx611x |
|---|---|
| date | Thu, 26 Jul 2018 16:47:12 -0400 |
| parents | 90170eb47bd1 |
| children | 7e359370b5a2 |
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| 32:90170eb47bd1 | 33:0ea51e29a0ce |
|---|---|
| 32 parser.add_argument('--out_genome_file') | 32 parser.add_argument('--out_genome_file') |
| 33 parser.add_argument('--java_mem_size') | 33 parser.add_argument('--java_mem_size') |
| 34 | 34 |
| 35 args = parser.parse_args() | 35 args = parser.parse_args() |
| 36 | 36 |
| 37 print(os.listdir(OUTPUT_DIR)) | 37 print(os.listdir(os.getcwd())) |
| 38 | 38 |
| 39 qualimap_bamqc( | 39 qualimap_bamqc( |
| 40 args.input_file, | 40 args.input_file, |
| 41 args.out_genome_file, | 41 args.out_genome_file, |
| 42 args.java_mem_size | 42 args.java_mem_size |