# HG changeset patch
# User scottx611x
# Date 1507052655 14400
# Node ID 8a435cbdfe3f8e9556aad1462d7afb18ac1549b6

planemo upload for repository https://github.com/scottx611x/clodius-galaxy commit 66732f35a84835a50b6d3863e35e25b7291b9304-dirty

diff -r 000000000000 -r 8a435cbdfe3f clodius.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/clodius.xml	Tue Oct 03 13:44:15 2017 -0400
@@ -0,0 +1,212 @@
+<?xml version='1.0' encoding='utf-8'?>
+
+<tool id="clodius" name="clodius" version="0.0.1">
+    <description>Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.</description>
+     <requirements>
+        <requirement type="package" version="0.3.2">pybigwig</requirement>
+        <requirement type="package" version="0.2.19">negspy</requirement>
+        <requirement type="package" version="1.0.7">slugid</requirement>
+        <requirement type="package" version="0.6.5">clodius</requirement>
+    </requirements>
+    <command>
+    <![CDATA[
+        clodius aggregate $file_type $input_file --assembly $genome_assembly
+
+        #if $output_filename:
+          --output-file $output_filename
+        #end if
+
+        #if $file_type == "bedpe":
+            --chr1-col $chromosome_one_column
+            --from1-col $from_one_column
+            --to1-col $to_one_column
+            --chr2-col $chromosome_two_column
+            --from2-col $from_two_column
+            --to2-col $to_two_column
+        #end if
+
+        #if $file_type == "bedfile":
+          --max-per-tile $max_per_tile
+          --importance-column $importance_column
+          #if $delimiter == "tab":
+            --delimiter '\t'
+          #end if
+        #end if
+
+        #if $file_type == "bedgraph":
+            #if $chromosome_column:
+              --chromosome-col $chromosome_column
+            #end if
+            
+            #if $from_position_column:
+              --from-pos-col $from_position_column
+            #end if
+            
+            #if $to_position_column:
+              --to-pos-col $to_position_column
+            #end if
+
+            #if $value_column:
+              --value-col $value_column
+            #end if
+
+            #if $has_header:
+              --has-header
+            #end if
+
+            #if $nan_value:
+              --nan-value $nan_value
+            #end if
+        #end if
+    ]]>
+    </command>
+    <inputs>
+        <param 
+          name="chromosome_column" 
+          type="integer" 
+          label="The column number (1-based) which contains the chromosome name."
+          optional="true"/>
+        <param 
+          name="chromosome_one_column" 
+          type="integer" 
+          label="The column containing the first chromosome."
+          optional="true"/>
+        <param 
+          name="chromosome_two_column" 
+          type="integer" 
+          label="The column containing the second chromosome."
+          optional="true"/>
+        <param 
+          name="delimiter"
+          type="text"
+          optional="true"/>
+        <param 
+          name="file_type" 
+          type="text" 
+          label="Filetype to be aggregated">
+            <option value="bedpe">Bedpe-like file</option>
+            <option value="bedfile">Gene Annotation File</option>
+            <option value="bedgraph">BedGraph file</option>
+            <option value="bigwig">BigWig File</option>
+        </param>
+        <param 
+          name="from_one_column" 
+          type="integer" 
+          label="The column containing the first start position."
+          optional="true"/>
+        <param 
+          name="from_two_column" 
+          type="integer" 
+          label="The column containing the second start position."
+          optional="true"/>
+        <param 
+          name="from_position_column" 
+          type="integer" 
+          label="The column number (1-based) which contains the starting position."
+          value="2"/>
+        <param 
+          name="genome_assembly" 
+          type="text"
+          label="Genome Assembly"
+          value="hg19"/>
+        <param 
+          name="has_header" 
+          type="boolean" 
+          label="Does this file have a header that we should ignore?"
+          optional="true"/>
+        <param 
+          name="input_file" 
+          type="data" 
+          label="File to be aggregated"/>
+       <param 
+          name="importance_column" 
+          type="integer" 
+          label="The column (1-based) containing information about how important that row is. 
+          If it's absent, then use the length of the region. 
+          If the value is equal to `random`, then a random value will be used for the importance (effectively leading to random sampling)"
+          optional="true"/>
+        <param 
+          name="max_per_tile" 
+          type="integer" 
+          label="Max per tile."
+          value="100"/>
+         <param 
+          name="nan_value" 
+          type="text" 
+          label="The string to use as a NaN value."
+          optional="true"/>
+        <param 
+          name="output_filename" 
+          type="text" 
+          label="The default output file name to use. If this isn't specified, clodius will replace the current extension with something resonable."
+          optional="true"/>
+        <param 
+          name="to_one_column" 
+          type="integer" 
+          label="The column containing the first end position."
+          optional="true"/>
+        <param 
+          name="to_two_column"
+          type="integer" 
+          label="The column containing the second end position."
+          optional="true"/>
+        <param 
+          name="to_position_column" 
+          type="integer" 
+          label="The column number (1-based) which contains the ending position."
+          value="3"/>
+        <param 
+          name="value_column" 
+          type="integer" 
+          label="The column number (1-based) which contains the actual value position."
+          value="4"/>
+    </inputs>
+    <outputs>
+        <data name="output_file" />
+    </outputs>
+    <tests>
+       <test expect_num_outputs="1" expect_exit_code="0">
+          <param name="input_file" value="Rao_RepA_GM12878_Arrowhead.txt"/>
+          <param name="file_type" value="bedpe" />
+          <param name="chromosome_one_column" value="1" />
+          <param name="chromosome_two_column" value="1" />
+          <param name="from_one_column" value="2" />
+          <param name="from_two_column" value="2" />
+          <param name="to_one_column" value="3" />
+          <param name="to_two_column" value="3" />
+          <param name="output_filename" value="bedpe_test.out" />
+          <output name="output_file" file="Rao_RepA_GM12878_Arrowhead.txt.multires" />     
+        </test>
+        <test expect_num_outputs="1" expect_exit_code="0">
+          <param name="input_file" value="geneAnnotationsExonsUnions.short.bed" />
+          <param name="file_type" value="bedfile" />
+          <param name="importance_column" value="5" />
+          <param name="max_per_tile" value="20" />
+          <param name="output_filename" value="bedfile_test.out" />
+        </test> 
+        <test expect_num_outputs="1" expect_exit_code="0">
+          <param name="input_file" value="cnvs_hw.tsv" />
+          <param name="file_type" value="bedgraph" />
+          <param name="genome_assembly" value="grch37" />
+          <param name="chromosome_column" value="2" />
+          <param name="from_position_column" value="3" />
+          <param name="to_position_column" value="4" />
+          <param name="value_column" value="5" />
+          <param name="has_header" value="true" />
+          <param name="nan_value" value="NA" />
+          <param name="output_filename" value="bedgraph_test.out" />
+        </test>
+        <test expect_num_outputs="1" expect_exit_code="0">
+          <param name="input_file" value="test.bw" />
+          <param name="file_type" value="bigwig" />
+          <param name="output_filename" value="bigwig_test.out" />
+          <output name="output_file" file="test.multires.bw" lines_diff="9"/>     
+        </test>
+    </tests>
+    <help>
+<![CDATA[
+**What it does**
+Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
+]]>
+    </help>
+</tool>
diff -r 000000000000 -r 8a435cbdfe3f test-data/Rao_RepA_GM12878_Arrowhead.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/Rao_RepA_GM12878_Arrowhead.txt	Tue Oct 03 13:44:15 2017 -0400
@@ -0,0 +1,1195 @@
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+chr7	125400000	126520000
+chr7	44600000	45160000
+chr7	68800000	70240000
+chr7	98520000	99000000
+chr7	110720000	111200000
+chr7	27200000	28080000
+chr7	103120000	103800000
+chr7	40920000	41880000
+chr7	36400000	37200000
+chr7	103840000	104480000
+chr7	137680000	138520000
+chr7	93360000	94000000
+chr7	31720000	32360000
+chr7	139160000	139760000
+chr7	47280000	47920000
+chr7	128040000	128920000
+chr7	123720000	124440000
+chr7	70280000	71200000
+chr7	41960000	42840000
+chr7	106800000	107520000
+chr7	48360000	48920000
+chr7	131320000	132080000
+chr7	28960000	29560000
+chr7	150960000	151600000
+chr7	68840000	69480000
+chr8	79400000	82600000
+chr8	8080000	11880000
+chr8	99120000	101120000
+chr8	61320000	62040000
+chr8	78520000	79200000
+chr8	48160000	48920000
+chr8	58360000	59520000
+chr8	77360000	78280000
+chr8	118320000	120120000
+chr8	64280000	65280000
+chr8	61320000	62600000
+chr8	69440000	70480000
+chr8	38920000	39800000
+chr8	122240000	123600000
+chr8	114440000	114920000
+chr8	136440000	137760000
+chr8	65360000	66480000
+chr8	128200000	128720000
+chr8	106880000	107640000
+chr8	37600000	38640000
+chr8	71680000	72520000
+chr8	18760000	20040000
+chr8	132000000	132960000
+chr8	121440000	121920000
+chr8	29120000	29920000
+chr8	20240000	21720000
+chr8	36680000	37560000
+chr8	32360000	33440000
+chr8	99520000	100960000
+chr8	22040000	23280000
+chr8	23440000	24320000
+chr8	134440000	135880000
+chr8	108880000	109720000
+chr8	98560000	99120000
+chr8	127800000	129320000
+chr8	96440000	97200000
+chr8	49040000	49800000
+chr8	124840000	125440000
+chr8	140400000	141400000
+chr8	102640000	103200000
+chr8	130800000	131680000
+chr8	141440000	142400000
+chr8	103240000	103880000
+chr8	74160000	74960000
+chr8	67560000	68400000
+chr8	130000000	130720000
+chr8	143720000	144320000
+chr8	54600000	55080000
+chr8	17960000	18680000
+chr8	20840000	21720000
+chr8	101680000	102280000
+chr9	82840000	85600000
+chr9	101840000	103200000
+chr9	4680000	5560000
+chr9	3120000	4240000
+chr9	113400000	114080000
+chr9	103440000	104080000
+chr9	33280000	34360000
+chr9	32320000	32960000
+chr9	86960000	88240000
+chr9	36840000	37400000
+chr9	20320000	21120000
+chr9	115880000	116440000
+chr9	123320000	124160000
+chr9	107520000	108480000
+chr9	86160000	86960000
+chr9	129560000	130800000
+chr9	74400000	75400000
+chr9	125640000	126120000
+chr9	99480000	100160000
+chr9	94800000	95600000
+chr9	37880000	38400000
+chr9	1000000	2080000
+chr9	101920000	102560000
+chr9	114400000	115600000
+chr9	122280000	123120000
+chr9	88400000	88960000
+chr9	5840000	6720000
+chr9	21160000	21760000
+chr9	2160000	2800000
+chr9	80000000	80960000
+chr9	93640000	94480000
+chr9	81920000	82720000
+chr9	129560000	130160000
+chr9	118320000	119400000
+chr9	17600000	18200000
+chr9	16120000	16840000
+chr9	34680000	35560000
+chr9	23520000	24200000
+chr9	110160000	111480000
+chr9	108640000	110080000
+chr9	111600000	112280000
+chr9	89000000	89840000
+chr9	130960000	131760000
+chr9	101040000	101560000
+chr9	126200000	127040000
+chr9	98000000	99000000
+chr9	124200000	124800000
+chr9	137360000	138320000
+chr9	127480000	128120000
+chr9	90560000	91200000
+chr9	110160000	111080000
+chr9	128160000	128680000
+chr9	95640000	96360000
+chr9	78920000	79640000
+chr9	72680000	73240000
+chr9	135240000	135840000
+chr9	134640000	135120000
+chr9	119480000	120200000
+chr9	36200000	36760000
diff -r 000000000000 -r 8a435cbdfe3f test-data/Rao_RepA_GM12878_Arrowhead.txt.multires
diff -r 000000000000 -r 8a435cbdfe3f test-data/cnvs_hw.tsv
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/cnvs_hw.tsv	Tue Oct 03 13:44:15 2017 -0400
@@ -0,0 +1,40 @@
+location	chrom	start	end	copynumber	segmented
+1:1-100000	1	1	100000	NA	NA
+1:100001-200000	1	100001	200000	NA	NA
+1:200001-300000	1	200001	300000	NA	NA
+1:300001-400000	1	300001	400000	NA	NA
+1:400001-500000	1	400001	500000	NA	NA
+1:500001-600000	1	500001	600000	NA	NA
+1:600001-700000	1	600001	700000	NA	NA
+1:700001-800000	1	700001	800000	NA	NA
+1:800001-900000	1	800001	900000	NA	NA
+1:900001-1000000	1	900001	1000000	-0.042	-0.038
+1:1000001-1100000	1	1000001	1100000	-0.221	-0.038
+1:1100001-1200000	1	1100001	1200000	-0.045	-0.038
+1:1200001-1300000	1	1200001	1300000	-0.022	-0.038
+1:1300001-1400000	1	1300001	1400000	-0.053	-0.038
+1:1400001-1500000	1	1400001	1500000	-0.053	-0.038
+1:1500001-1600000	1	1500001	1600000	NA	NA
+1:1600001-1700000	1	1600001	1700000	NA	NA
+1:1700001-1800000	1	1700001	1800000	-0.137	-0.038
+1:1800001-1900000	1	1800001	1900000	NA	NA
+1:1900001-2000000	1	1900001	2000000	0.001	-0.038
+1:2000001-2100000	1	2000001	2100000	-0.021	-0.038
+1:2100001-2200000	1	2100001	2200000	0.066	-0.038
+1:2200001-2300000	1	2200001	2300000	0.01	-0.038
+1:2300001-2400000	1	2300001	2400000	-0.024	-0.038
+1:2400001-2500000	1	2400001	2500000	0.046	-0.038
+1:2500001-2600000	1	2500001	2600000	NA	NA
+1:2600001-2700000	1	2600001	2700000	NA	NA
+1:2700001-2800000	1	2700001	2800000	-0.538	-0.495
+1:2800001-2900000	1	2800001	2900000	-0.467	-0.495
+1:2900001-3000000	1	2900001	3000000	-0.614	-0.495
+1:3000001-3100000	1	3000001	3100000	-0.407	-0.495
+1:3100001-3200000	1	3100001	3200000	-0.428	-0.495
+1:3200001-3300000	1	3200001	3300000	-0.437	-0.495
+1:3300001-3400000	1	3300001	3400000	-0.522	-0.495
+1:3400001-3500000	1	3400001	3500000	-0.499	-0.495
+1:3500001-3600000	1	3500001	3600000	-0.529	-0.495
+1:3600001-3700000	1	3600001	3700000	NA	NA
+1:3700001-3800000	1	3700001	3800000	-0.469	-0.495
+1:3800001-3900000	1	3800001	3900000	-0.468	-0.495
diff -r 000000000000 -r 8a435cbdfe3f test-data/geneAnnotationsExonsUnions.short.bed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/geneAnnotationsExonsUnions.short.bed	Tue Oct 03 13:44:15 2017 -0400
@@ -0,0 +1,100 @@
+chr5	176022802	176037131	GPRIN1	9	-	union_114787	114787	protein-coding	G protein regulated inducer of neurite outgrowth 1	176023808	176026835	176022802,176036999	176026878,176037131
+chr8	56015016	56438710	XKR4	9	+	union_114786	114786	protein-coding	XK related 4	56015048	56436786	56015016,56270237,56435839	56015854,56270437,56438710
+chr12	57916658	57923931	MBD6	15	+	union_114785	114785	protein-coding	methyl-CpG binding domain protein 6	57918086	57923017	57916658,57917811,57918062,57918502,57918735,57919130,57920348,57921289,57921630,57921929,57922448,57922728,57922942	57916794,57917875,57918199,57918605,57918898,57920171,57921010,57921443,57921800,57922343,57922501,57922792,57923931
+chr1	33979598	34631443	CSMD2	21	-	union_114784	114784	protein-coding	CUB and Sushi multiple domains 2	33985117	34631414	33979598,33985064,33985411,33987062,33988906,33990481,33992795,33998649,33999395,34002621,34003035,34006124,34006729,34008319,34011636,34015776,34023333,34024899,34033192,34033192,34034973,34037131,34038105,34042895,34046352,34049241,34052103,34052687,34066464,34067968,34070881,34071462,34076640,34080103,34082505,34083098,34087766,34088969,34090118,34090650,34092085,34099021,34100813,34101959,34112247,34117922,34123545,34128489,34158529,34164352,34166116,34174688,34180186,34181885,34189796,34190116,34190949,34192147,34204740,34208880,34238169,34254200,34258023,34276343,34285313,34286069,34291297,34312484,34383694,34401360,34498194,34554577,34630511,34631347	33982170,33985277,33985550,33987150,33989019,33990643,33992858,33998829,33999507,34002695,34003209,34006298,34006909,34008496,34011819,34015950,34023522,34025073,34033366,34033441,34035147,34037326,34038291,34043084,34046499,34049430,34052217,34052768,34066610,34068146,34071070,34071588,34076850,34080220,34082575,34083217,34087871,34089066,34090243,34090854,34092181,34099135,34100930,34102154,34112435,34118061,34123737,34128692,34158656,34164544,34166273,34174858,34180375,34182101,34189913,34190305,34191137,34192286,34204935,34209207,34238352,34254313,34258127,34276465,34285438,34286157,34291375,34312597,34383902,34401555,34498307,34554794,34630875,34631443
+chr19	48988527	49016446	LMTK3	20	-	union_114783	114783	protein-coding	lemur tyrosine kinase 3	48989029	49016446	48988527,48994364,48994660,48996950,49000649,49004252,49004539,49004734,49005689,49006165,49012107,49012693,49013279,49013715,49014757,49016396	48989046,48994502,48994796,48997366,49003174,49004402,49004661,49004819,49005838,49006253,49012226,49012770,49013430,49013849,49014870,49016446
+chr6	30614815	30620987	C6orf136	12	+	union_221545	221545	protein-coding	chromosome 6 open reading frame 136	30615008	30620692	30614815,30614815,30617334,30618770,30619042,30620424,30620578	30615080,30615623,30617736,30618859,30619243,30620494,30620987
+chr6	38136226	38607924	BTBD9	27	-	union_114781	114781	protein-coding	BTB domain containing 9	38142760	38565870	38136226,38160294,38224184,38256047,38312759,38370592,38545375,38547993,38560351,38561739,38561739,38563545,38565685,38580609,38607575	38142958,38160373,38224292,38256237,38312869,38370679,38545495,38548213,38560616,38562103,38562151,38563843,38565897,38580809,38607924
+chr16	81134483	81253975	PKD1L2	13	-	union_114780	114780	protein-coding	polycystin 1 like 2 (gene/pseudogene)	81134727	81253975	81134483,81142166,81142798,81145767,81150975,81155190,81157255,81161365,81161365,81161483,81164063,81167167,81171041,81173112,81174901,81180902,81181744,81183294,81185371,81187565,81187841,81190463,81193228,81194287,81197204,81198248,81199443,81201523,81203894,81204547,81208324,81209209,81211411,81213249,81214755,81214755,81219096,81222485,81224269,81228552,81232266,81236109,81241092,81242095,81248613,81249849,81253674	81134889,81142298,81142900,81145978,81151136,81155318,81157389,81161483,81161671,81161671,81164249,81167305,81171138,81173317,81175130,81181119,81181962,81183494,81185518,81187744,81187943,81190694,81193422,81194510,81197336,81198375,81199568,81201706,81204410,81204679,81208519,81209355,81211588,81213391,81214876,81214967,81219304,81222603,81224319,81228630,81232671,81236339,81241240,81242206,81248799,81250011,81253975
+chr17	34071529	34079897	GAS2L2	5	-	union_246176	246176	protein-coding	growth arrest specific 2 like 2	34071872	34079869	34071529,34074034,34074867,34076128,34077095,34079484	34073430,34074287,34074964,34076236,34077337,34079897
+chr9	130830478	130871537	SLC25A25	15	+	union_114789	114789	protein-coding	solute carrier family 25 member 25	130830598	130871537	130830478,130853742,130860760,130860760,130863374,130863587,130864358,130864648,130865959,130868007,130868428,130868631,130869307,130869538	130830859,130854368,130861004,130861047,130863501,130863675,130864394,130864760,130866118,130868160,130868536,130868799,130869458,130871537
+chr8	113235158	114449242	CSMD3	14	-	union_114788	114788	protein-coding	CUB and Sushi multiple domains 3	113236999	114449083	113235158,113240984,113243773,113246593,113249418,113253948,113256622,113259248,113266481,113267482,113275867,113277639,113293402,113299292,113301593,113303738,113304765,113308061,113314021,113316949,113318235,113323206,113326134,113326657,113331065,113332129,113347557,113348880,113349771,113353705,113358325,113363403,113364644,113392580,113395795,113402892,113418752,113420546,113421147,113484819,113504717,113516018,113518919,113529262,113562899,113564822,113568991,113585729,113599294,113649045,113650924,113657337,113662389,113668382,113678505,113694670,113697634,113702096,113812390,113841914,113871373,113933855,113960018,113966912,113988065,114031295,114110984,114185950,114290820,114326799,114388966,114389301,114448905	113237159,113241120,113243861,113246706,113249577,113254014,113256802,113259360,113266555,113267656,113276041,113277819,113293579,113299475,113301767,113303924,113304939,113308235,113314195,113317144,113318421,113323395,113326281,113326846,113331179,113332210,113347703,113349058,113349960,113353915,113358442,113363473,113364763,113392685,113395892,113403017,113418956,113420642,113421261,113484936,113504912,113516206,113519058,113529454,113563102,113564949,113569183,113585886,113599464,113649234,113651140,113657454,113662578,113668570,113678644,113694865,113697961,113702279,113812503,113842018,113871495,113933980,113960106,113966990,113988377,114031408,114111192,114186145,114290933,114327022,114389114,114389382,114449242
+chr1	163291722	163325553	NUF2	53	+	union_83540	83540	protein-coding	NUF2, NDC80 kinetochore complex component	163295841	163325259	163291722,163291722,163295821,163297277,163298017,163298635,163306540,163307809,163309170,163310153,163313522,163315467,163317552,163318734,163325124	163291856,163292002,163295964,163297352,163298094,163298697,163306638,163307883,163309267,163310216,163313660,163315608,163317728,163318870,163325553
+chr19	14142551	14163717	IL27RA	20	+	union_9466	9466	protein-coding	interleukin 27 receptor subunit alpha	14142684	14163102	14142551,14143197,14150319,14150564,14153264,14153527,14156965,14157241,14159792,14159967,14161569,14162418,14162691,14162907	14142784,14143315,14150477,14150722,14153424,14153601,14157149,14157430,14159894,14160126,14161695,14162512,14162785,14163717
+chr7	139246315	139477693	HIPK2	148	-	union_28996	28996	protein-coding	homeodomain interacting protein kinase 2	139257672	139477422	139246315,139259873,139268562,139281462,139285162,139288826,139297947,139299031,139299031,139305146,139311346,139313698,139315910,139316347,139415730,139477403	139258143,139260034,139268810,139281744,139285342,139288969,139298069,139299158,139299239,139305309,139311531,139313785,139316030,139316471,139416814,139477693
+chr8	146075550	146078963	COMMD5	17	-	union_28991	28991	protein-coding	COMM domain containing 5	146076048	146076723	146075550,146078110,146078223,146078377,146078756	146076780,146078452,146078452,146078452,146078963
+chr19	8920251	8942980	ZNF558	7	-	union_148156	148156	protein-coding	zinc finger protein 558	8921956	8933335	8920251,8923236,8923802,8931855,8932117,8932678,8933304,8934757,8935677,8941993,8942884	8922739,8923319,8923898,8931982,8932739,8932767,8933400,8935093,8935784,8942077,8942980
+chr11	63766029	63933585	MACROD1	24	-	union_28992	28992	protein-coding	MACRO domain containing 1	63766339	63933466	63766029,63766309,63766426,63766802,63767001,63767113,63767698,63782723,63918710,63919763,63933168	63766159,63766344,63766508,63766876,63767032,63767235,63767815,63782753,63918827,63919865,63933585
+chr14	102196773	102198862	LINC00239	1	+	union_145200	145200	ncRNA	long intergenic non-protein coding RNA 239	102198862	102198862	102196773,102197693,102198124,102198572	102196824,102197805,102198313,102198862
+chr3	126061477	126076236	KLF15	34	-	union_28999	28999	protein-coding	Kruppel like factor 15	126062569	126071765	126061477,126070683,126076079	126062738,126071790,126076236
+chr8	121408082	121457647	MRPL13	25	-	union_28998	28998	protein-coding	mitochondrial ribosomal protein L13	121408342	121457334	121408082,121426229,121432091,121437545,121444269,121455424,121457307	121408364,121426351,121432178,121437606,121444363,121455548,121457647
+chr11	18552949	18610293	UEVLD	11	-	union_55293	55293	protein-coding	UEV and lactate/malate dehyrogenase domains	18553866	18610201	18552949,18555876,18557952,18566169,18568426,18579774,18585196,18586438,18587893,18591760,18596893,18600270,18600974,18610159	18554034,18556000,18558016,18566343,18568597,18579877,18585548,18586557,18588029,18591924,18596959,18600355,18601065,18610293
+chr8	37701397	37707431	BRF2	19	-	union_55290	55290	protein-coding	BRF2, RNA polymerase III transcription initiation factor subunit	37702007	37707301	37701397,37704371,37706113,37707147	37702731,37704693,37706173,37707431
+chr11	68228185	68382801	PPP6R3	50	+	union_55291	55291	protein-coding	protein phosphatase 6 regulatory subunit 3	68305132	68382145	68228185,68272612,68286968,68305126,68312305,68315534,68318588,68321612,68326033,68331770,68334481,68337215,68338507,68341576,68343425,68350510,68355394,68355412,68358127,68359043,68363564,68367808,68369330,68370809,68377078,68377371,68380533,68382099	68228295,68272717,68287119,68305359,68312492,68315672,68318654,68321725,68326147,68331900,68334634,68337365,68338572,68341692,68343511,68350597,68355492,68355492,68358182,68359174,68363686,68367962,68369437,68370960,68377096,68377491,68382801,68382801
+chr4	26585545	26757835	TBC1D19	12	+	union_55296	55296	protein-coding	TBC1 domain family member 19	26585815	26756569	26585545,26614790,26616029,26622234,26638832,26640392,26641762,26661218,26667954,26673770,26675397,26685296,26689966,26719554,26721702,26737076,26741485,26744129,26750032,26755441,26756494	26585914,26614863,26616075,26622310,26638907,26640456,26641809,26661329,26668027,26673809,26675510,26685371,26690029,26719639,26721747,26737109,26741595,26744221,26750148,26755512,26757835
+chr12	28343359	28703099	CCDC91	19	+	union_55297	55297	protein-coding	coiled-coil domain containing 91	28410148	28702106	28343359,28410134,28412296,28458581,28459674,28460577,28515370,28544236,28603093,28603282,28605410,28636984,28701995	28343574,28410178,28412375,28458739,28459878,28460682,28515448,28544344,28603186,28603351,28605587,28637098,28703099
+chr4	153242409	153456393	FBXW7	268	-	union_55294	55294	protein-coding	F-box and WD repeat domain containing 7	153244032	153332955	153242409,153245335,153247157,153249359,153250823,153251883,153253747,153258953,153268081,153271193,153273621,153303340,153332311,153332454,153333631,153456092,153456278	153244301,153245546,153247383,153249541,153250937,153252020,153253871,153259088,153268223,153271276,153274110,153303664,153333024,153333024,153333681,153456185,153456393
+chr17	27369917	27384236	PIPOX	12	+	union_51268	51268	protein-coding	pipecolic acid and sarcosine oxidase	27370243	27383323	27369917,27371876,27379937,27380430,27381562,27382080,27382830,27383192	27370357,27372025,27380151,27380613,27381709,27382239,27382906,27384236
+chr12	10222152	10251664	CLEC1A	12	-	union_51267	51267	protein-coding	C-type lectin domain family 1 member A	10223931	10251521	10222152,10225891,10228102,10233835,10241680,10241722,10245020,10251406	10224112,10226010,10228254,10234012,10241821,10241821,10245118,10251664
+chr12	10145661	10151899	CLEC1B	35	-	union_51266	51266	protein-coding	C-type lectin domain family 1 member B	10145741	10151699	10145661,10147738,10149444,10149758,10150880,10151635	10145886,10147845,10149599,10149878,10150979,10151899
+chr5	133634114	133706738	CDKL3	16	-	union_51265	51265	protein-coding	cyclin dependent kinase like 3	133634341	133702214	133634114,133635346,133638280,133640095,133642299,133643691,133643828,133644264,133647982,133655048,133657481,133685939,133695587,133702049,133702667,133706688	133634401,133635441,133638378,133640258,133642393,133644157,133644157,133644418,133648071,133655188,133657594,133686118,133695782,133702235,133702765,133706738
+chr17	48445227	48450562	MRPL27	21	-	union_51264	51264	protein-coding	mitochondrial ribosomal protein L27	48445452	48450531	48445227,48447392,48447815,48450491	48445659,48447460,48447947,48450562
+chr2	99797541	99816020	MRPL30	18	+	union_51263	51263	protein-coding	mitochondrial ribosomal protein L30	99802666	99816020	99797541,99802639,99804639,99811213,99811578,99812035,99812035,99813616	99797712,99802717,99804720,99811360,99811652,99812219,99816020,99816020
+chr6	28870778	28891768	TRIM27	77	-	union_5987	5987	protein-coding	tripartite motif containing 27	28871846	28891409	28870778,28875012,28876584,28876749,28879472,28887788,28889668,28890989	28872442,28875039,28876617,28876865,28879495,28888019,28889764,28891768
+chr3	186507681	186524484	RFC4	81	-	union_5984	5984	protein-coding	replication factor C subunit 4	186507757	186522502	186507681,186507930,186508114,186509513,186510278,186510592,186512446,186515323,186518905,186522371,186524078,186524213	186507853,186508044,186508195,186509639,186510399,186510736,186512566,186515403,186518984,186522513,186524290,186524484
+chrX	75392763	75398145	PBDC1	12	+	union_51260	51260	protein-coding	polysaccharide biosynthesis domain containing 1	75392973	75397852	75392763,75392770,75393419,75394724,75395307,75396715,75397450,75397450	75393003,75393003,75393485,75394784,75395448,75396827,75398033,75398145
+chrY	142990	220022	PLCXD1	9	+	union_55344	55344	protein-coding	phosphatidylinositol specific phospholipase C X domain containing 1	150854	220022	142990,148060,148148,150833,155399,157314,158165,159701,165763,165763,169259,192990,198060,198148,200833,205399,207314,208165,209701,215763,215763,219259	143061,148351,148351,150981,155536,157443,158321,159885,166059,170022,170022,193061,198351,198351,200981,205536,207443,208321,209885,216059,220022,220022
+chr5	94987884	95018714	SPATA9	7	-	union_83890	83890	protein-coding	spermatogenesis associated 9	94994326	95018714	94987884,94991034,94991652,94992661,94994019,94994320,94994475,94999656,95010389,95011115,95018231,95018497,95018522	94988913,94991199,94991781,94992808,94994617,94994617,94994617,94999752,95010492,95011343,95018320,95018714,95018714
+chr4	113460488	113558151	ZGRF1	13	-	union_55345	55345	protein-coding	zinc finger GRF-type containing 1	113460702	113554332	113460488,113461018,113461976,113462247,113468440,113469408,113474990,113475860,113479305,113481888,113483526,113484286,113502818,113505133,113506696,113507600,113508435,113510879,113524679,113527163,113530534,113533679,113538595,113541157,113544972,113553085,113554311,113558006	113460845,113461280,113462111,113462424,113468564,113469536,113475138,113475938,113479465,113482151,113483641,113484430,113502958,113505330,113506881,113507739,113509085,113511030,113524853,113527247,113530585,113533744,113540846,113541346,113545032,113553166,113554398,113558151
+chr9	134399182	134406662	UCK1	15	-	union_83549	83549	protein-coding	uridine-cytidine kinase 1	134400426	134406662	134399182,134401315,134401831,134404330,134404514,134404514,134404874,134404874,134405872,134405872,134406453,134406480	134400608,134401364,134401890,134404425,134404588,134404657,134404943,134404971,134406032,134406074,134406662,134406662
+chr16	1961464	1968324	HS3ST6	6	-	union_64711	64711	protein-coding	heparan sulfate-glucosamine 3-sulfotransferase 6	1961590	1968324	1961464,1967911	1962206,1968324
+chr10	100143321	100174978	PYROXD2	15	-	union_84795	84795	protein-coding	pyridine nucleotide-disulphide oxidoreductase domain 2	100143554	100174892	100143321,100144703,100146957,100148110,100150354,100150766,100152188,100152698,100154952,100155147,100157101,100159858,100167338,100167660,100170695,100174765	100143625,100144824,100147064,100148265,100150511,100150839,100152323,100152840,100155050,100155209,100157255,100160014,100167412,100167754,100170715,100174978
+chr20	16252748	16554079	KIF16B	18	-	union_55614	55614	protein-coding	kinesin family member 16B	16253897	16553920	16252748,16292979,16316570,16336974,16347487,16351230,16352309,16354901,16359449,16362338,16385457,16387018,16407748,16409597,16410507,16474935,16478257,16485016,16486366,16486666,16488602,16492062,16493470,16496192,16506736,16509015,16553873	16254056,16293063,16316660,16337097,16348471,16351281,16352406,16355054,16360808,16362392,16385546,16387101,16407886,16409649,16410627,16474995,16478323,16485192,16486498,16486835,16488745,16492172,16493568,16496309,16506850,16509085,16554079
+chr17	39164773	39165366	KRTAP3-1	5	-	union_83896	83896	protein-coding	keratin associated protein 3-1	39165029	39165326	39164773	39165366
+chr17	4067111	4167290	ANKFY1	31	-	union_51479	51479	protein-coding	ankyrin repeat and FYVE domain containing 1	4071072	4167290	4067111,4072491,4074008,4075850,4076648,4077203,4080420,4082151,4083015,4084548,4085475,4085475,4086692,4087106,4088112,4092676,4098272,4098697,4100667,4109615,4111227,4113118,4120277,4139066,4145550,4166889,4167226	4071205,4072582,4074155,4075975,4076739,4077351,4080597,4082352,4083172,4084667,4085644,4085647,4086846,4087205,4088341,4092774,4098472,4098766,4100872,4109781,4111377,4113242,4120413,4139185,4145743,4167142,4167290
+chr22	45064426	45133561	PRR5	15	+	union_55615	55615	protein-coding	proline rich 5	45075679	45133127	45064426,45072687,45075226,45098077,45098371,45110470,45121123,45122456,45127609,45128130,45130906,45132651	45064685,45073120,45075765,45098488,45098488,45110551,45121172,45122514,45127701,45128271,45131042,45133561
+chr17	39182278	39183454	KRTAP1-5	4	-	union_83895	83895	protein-coding	keratin associated protein 1-5	39182882	39183407	39182278	39183454
+chr17	36284004	36348621	TBC1D3	19	-	union_729873	729873	protein-coding	TBC1 domain family member 3	36285544	36347081	36284004,36285543,36285778,36287147,36287669,36288193,36288630,36289993,36290585,36291419,36291898,36292427,36292897,36294031,36337527,36339575,36340098,36340661,36341111,36341919,36342583,36343885,36344324,36344875,36345438,36346761,36347009,36348510	36284115,36285616,36285864,36287187,36287750,36288301,36288740,36290042,36290706,36291514,36291964,36292527,36293050,36295098,36338594,36339728,36340198,36340727,36341206,36342040,36342632,36343995,36344432,36344956,36345478,36346847,36347082,36348621
+chr15	22465805	22466547	LOC642131	1	-	union_642131	642131	pseudo	-	22466547	22466547	22465805,22466447	22466362,22466547
+chr3	37427759	37476988	C3orf35	6	+	union_339883	339883	protein-coding	chromosome 3 open reading frame 35	37458274	37476988	37427759,37440967,37452628,37453855,37453860,37458044,37458044,37458509,37458509,37458743,37458743,37459157,37476334,37476431	37427861,37441150,37452800,37453979,37453979,37458215,37458274,37458633,37459865,37458983,37459865,37459240,37476988,37476988
+chr20	6055491	6104191	FERMT1	58	-	union_55612	55612	protein-coding	fermitin family member 1	6057819	6100201	6055491,6060082,6064686,6065712,6068423,6069611,6075585,6077548,6078170,6088178,6090944,6093123,6096457,6100050,6103420	6057993,6060224,6064811,6065934,6068530,6069736,6075635,6077680,6078278,6088281,6091158,6093270,6096691,6100219,6104191
+chr4	147627789	147867038	TTC29	9	-	union_83894	83894	protein-coding	tetratricopeptide repeat domain 29	147628309	147867038	147627789,147628636,147628636,147724608,147741276,147752792,147754957,147788649,147795867,147824695,147830177,147858745,147860955,147863735,147866182,147866860	147628340,147628700,147628703,147724837,147741400,147752946,147755049,147788735,147796080,147824881,147830401,147858829,147861053,147863836,147866229,147867038
+chrX	63487960	63615333	MTMR8	7	-	union_55613	55613	protein-coding	myotubularin related protein 8	63488416	63615243	63487960,63490826,63548651,63551436,63555958,63557147,63563490,63564924,63568539,63569821,63574656,63576055,63579284,63615219	63488923,63490953,63548780,63551637,63556008,63557273,63563600,63565057,63568674,63569950,63574814,63576218,63579407,63615333
+chr20	33421377	33422265	HMGB3P1	4	-	union_128872	128872	pseudo	high mobility group box 3 pseudogene 1	33422265	33422265	33421377	33422265
+chr12	56119226	56123457	CD63	177	-	union_967	967	protein-coding	CD63 molecule	56119344	56122125	56119226,56119596,56119904,56120483,56120673,56120934,56120934,56121395,56121647,56122059,56122059,56122299,56122579,56122736,56123065	56119410,56119680,56120045,56120579,56120748,56121054,56121123,56121572,56121684,56122136,56122266,56122434,56122761,56122922,56123457
+chr20	33873533	33880225	FAM83C	6	-	union_128876	128876	protein-coding	family with sequence similarity 83 member C	33874337	33880107	33873533,33876263,33876593,33879594	33875775,33876388,33876761,33880225
+chr5	24835388	24840692	LOC340107	1	-	union_340107	340107	ncRNA	-	24840692	24840692	24835388,24838964,24840357	24837260,24839047,24840692
+chr14	74111577	74170431	DNAL1	8	+	union_83544	83544	protein-coding	dynein axonemal light chain 1	74111742	74162645	74111577,74119872,74121549,74125549,74128689,74138244,74153961,74156077,74162604	74111745,74119918,74121588,74125659,74128745,74138300,74154088,74156218,74170431
+chr9	107366951	107367908	OR13C2	4	-	union_392376	392376	protein-coding	olfactory receptor family 13 subfamily C member 2	107366951	107367908	107366951	107367908
+chr1	205681946	205719372	NUCKS1	51	-	union_64710	64710	protein-coding	nuclear casein kinase and cyclin dependent kinase substrate 1	205687407	205719101	205681946,205688654,205689628,205693053,205696827,205698699,205719084	205687607,205688804,205689781,205693109,205696933,205698749,205719372
+chr12	8666135	8674960	CLEC4D	8	+	union_338339	338339	protein-coding	C-type lectin domain family 4 member D	8666328	8673867	8666135,8667831,8670759,8671604,8672821,8673719	8666356,8667924,8670870,8671756,8672937,8674960
+chr9	100000707	100139577	LOC100499484-C9ORF174	4	+	union_57653	57653	ncRNA	-	100139577	100139577	100000707,100008377,100013073,100013822,100038850,100039837,100041643,100043797,100049941,100052865,100053135,100053652,100056228,100057126,100070017,100070264,100071695,100074394,100075517,100076674,100076899,100077132,100079346,100080744,100082407,100085114,100086062,100087300,100088835,100090301,100092435,100092603,100105621,100109595,100111392,100112690,100116850,100117173,100119908,100122263,100124007,100124477,100124477,100124644,100126299,100126332,100127954,100128840,100132203,100132922,100133876,100136824,100137735,100139044	100000849,100008468,100013125,100013839,100038979,100039908,100041755,100043951,100050017,100052947,100053184,100053769,100056392,100057273,100070088,100070414,100071886,100074483,100075627,100076803,100077010,100077228,100079510,100080864,100082487,100085203,100086185,100087474,100088951,100090428,100092475,100093049,100105845,100109771,100111573,100112837,100116995,100117290,100120007,100122383,100124180,100124533,100124723,100124723,100126410,100126410,100128021,100128982,100132364,100133060,100133988,100136930,100137871,100139577
+chr4	141786724	142054616	RNF150	11	-	union_57484	57484	protein-coding	ring finger protein 150	141789414	142053962	141786724,141832297,141847130,141868807,141870454,141888776,142053478	141789533,141832508,141847227,141868890,141870526,141889027,142054616
+chr11	93394815	93463522	CEP295	13	+	union_85459	85459	protein-coding	centrosomal protein 295	93399873	93463435	93394815,93399847,93400772,93401973,93402842,93408736,93412577,93416724,93417129,93420809,93424848,93425092,93428662,93429485,93429847,93435625,93435941,93439910,93454477,93455119,93456206,93457419,93458816,93460141,93461846,93462599,93462779,93463035,93463214,93463396	93394940,93399981,93400973,93402098,93402936,93408832,93412718,93416908,93417294,93421031,93424941,93425196,93428800,93429583,93433352,93435803,93436085,93440063,93454578,93455216,93456455,93457541,93458997,93460803,93461987,93462696,93462947,93463135,93463314,93463522
+chr19	1205797	1228434	STK11	355	+	union_6794	6794	protein-coding	serine/threonine kinase 11	1206912	1226646	1205797,1218415,1219322,1220371,1220579,1221211,1221947,1222983,1226452,1227591	1207202,1218499,1219412,1220504,1220716,1221339,1222005,1223171,1226662,1228434
+chr1	43147905	43169474	YBX1	321	+	union_4904	4904	protein-coding	Y-box binding protein 1	43148236	43169474	43147905,43148657,43149073,43159160,43161869,43162312,43162850,43166451,43167651	43148402,43149036,43149137,43159194,43161959,43162615,43162933,43166717,43169474
+chrX	18443724	18671749	CDKL5	77	+	union_6792	6792	protein-coding	cyclin dependent kinase like 5	18525216	18671664	18443724,18460343,18460494,18525054,18528939,18582596,18593473,18597967,18600010,18602382,18606073,18613467,18616581,18622021,18626930,18627584,18631271,18637986,18643247,18646490,18646490,18664126,18668529,18671551	18443815,18460381,18460543,18525280,18528974,18582642,18593610,18598088,18600070,18602473,18606263,18613548,18616733,18622988,18627032,18627690,18631395,18638086,18643367,18646707,18653752,18664210,18668712,18671749
+chr12	57422300	57444549	MYO1A	31	-	union_4640	4640	protein-coding	myosin IA	57422538	57442107	57422300,57422915,57423218,57423523,57423993,57424823,57430090,57430555,57430725,57431331,57431652,57432195,57432592,57432995,57434967,57435215,57436855,57437023,57437639,57437889,57440335,57440646,57440844,57441086,57441410,57441772,57441993,57443670,57443670,57444501	57422665,57423043,57423371,57423656,57424100,57424958,57430165,57430624,57430875,57431425,57431853,57432422,57432793,57433058,57435072,57435281,57436942,57437142,57437787,57437993,57440434,57440710,57440891,57441191,57441505,57441888,57442127,57443890,57443901,57444549
+chr20	54944444	54967393	AURKA	541	-	union_6790	6790	protein-coding	aurora kinase A	54945213	54963253	54944444,54945540,54948463,54956488,54958040,54959325,54961312,54963211,54963742,54965611,54966998,54967209,54967223	54945396,54945715,54948612,54956627,54958232,54959380,54961589,54963258,54963840,54965721,54967393,54967393,54967393
+chr1	220439520	220441057	AURKAPS1	2	-	union_6791	6791	pseudo	aurora kinase A pseudogene 1	220441057	220441057	220439520	220441057
+chr6	30780642	30798436	LINC00243	5	-	union_401247	401247	ncRNA	long intergenic non-protein coding RNA 243	30798436	30798436	30780642,30798291	30782549,30798436
+chr5	3417265	3536208	LINC01019	2	-	union_285577	285577	ncRNA	long intergenic non-protein coding RNA 1019	3536208	3536208	3417265,3421184,3422395,3531866,3535875	3419430,3421418,3422736,3531992,3536208
+chr1	111413820	111442558	CD53	42	+	union_963	963	protein-coding	CD53 molecule	111434030	111441817	111413820,111415721,111415777,111434013,111434966,111436948,111437581,111439274,111440430,111441745	111413881,111415870,111415870,111434093,111435155,111437023,111437677,111439355,111440514,111442558
+chr8	136246373	136311962	LINC01591	1	+	union_286094	286094	ncRNA	long intergenic non-protein coding RNA 1591	136311962	136311962	136246373,136300338,136303418,136306000,136306036,136308739,136311669	136246757,136300355,136303595,136306113,136306113,136308995,136311962
+chr8	16884746	16980148	MICU3	5	+	union_286097	286097	protein-coding	mitochondrial calcium uptake family member 3	16884788	16976284	16884746,16921592,16927196,16935291,16939201,16942744,16944472,16948054,16955966,16961899,16962921,16971601,16973951,16976215,16977796	16885169,16921746,16927228,16935370,16939249,16942827,16944544,16948093,16956062,16962000,16963093,16971710,16974109,16976284,16980148
+chr16	28603263	28608391	SULT1A2	41	-	union_6799	6799	protein-coding	sulfotransferase family 1A member 2	28603348	28607251	28603263,28603583,28604572,28604762,28606687,28606870,28607103,28607454,28608317	28603461,28603764,28604667,28604889,28606785,28606996,28607255,28607801,28608391
+chr5	140624916	140627801	PCDHB15	9	+	union_56121	56121	protein-coding	protocadherin beta 15	140625146	140627510	140624916	140627801
+chr5	140805852	140807825	PCDHGB8P	6	+	union_56120	56120	pseudo	protocadherin gamma subfamily B, 8 pseudogene	140807825	140807825	140805852	140807825
+chr4	40337345	40357234	CHRNA9	34	+	union_55584	55584	protein-coding	cholinergic receptor nicotinic alpha 9 subunit	40337484	40356537	40337345,40337843,40339226,40350898,40355995	40337548,40337989,40339381,40351431,40357234
+chr7	143806675	143807632	OR2A2	4	+	union_442361	442361	protein-coding	olfactory receptor family 2 subfamily A member 2	143806675	143807632	143806675	143807632
+chr5	140579347	140582618	PCDHB11	12	+	union_56125	56125	protein-coding	protocadherin beta 11	140579347	140581741	140579347	140582618
+chr5	140588290	140591698	PCDHB12	8	+	union_56124	56124	protein-coding	protocadherin beta 12	140588479	140590867	140588290	140591698
+chr5	140566700	140571111	PCDHB9	10	+	union_56127	56127	protein-coding	protocadherin beta 9	140566892	140569285	140566700,140568034	140568034,140571111
+chr5	140571951	140575213	PCDHB10	15	+	union_56126	56126	protein-coding	protocadherin beta 10	140572125	140574528	140571951	140575213
+chr5	140552201	140555957	PCDHB7	9	+	union_56129	56129	protein-coding	protocadherin beta 7	140552416	140554798	140552201	140555957
+chr8	7345190	7681412	DEFB105B	9	-	union_504180	504180	protein-coding	defensin beta 105B	7345242	7681360	7345190,7345657,7346948,7679487,7680903,7681290	7345312,7345699,7347115,7679654,7680945,7681412
+chr22	26879849	26887904	SRRD	10	+	union_402055	402055	protein-coding	SRR1 domain containing	26879856	26887638	26879849,26881988,26883994,26884355,26886009,26886990,26887428	26880065,26882029,26884254,26884454,26886164,26887036,26887904
+chr10	50887683	50916956	C10orf53	5	+	union_282966	282966	protein-coding	chromosome 10 open reading frame 53	50887743	50916663	50887683,50901819,50902583,50916406	50887840,50901939,50902948,50916956
+chr2	234216308	234255701	SAG	40	+	union_6295	6295	protein-coding	S-antigen visual arrestin	234217835	234255558	234216308,234217807,234224720,234227396,234229275,234231591,234235766,234237123,234238138,234240285,234243607,234247321,234249100,234250916,234255048,234255452	234216668,234217910,234224781,234227441,234229469,234231651,234235843,234237259,234238223,234240358,234243745,234247399,234249124,234250972,234255058,234255701
+chr3	130732716	130745698	ASTE1	7	-	union_28990	28990	protein-coding	asteroid homolog 1 (Drosophila)	130732900	130745698	130732716,130734025,130734987,130735833,130737349,130742848,130744317,130745350,130745575	130733231,130734100,130735183,130735893,130737560,130744175,130744438,130745698,130745698
+chr4	53578560	53580305	DANCR	21	+	union_57291	57291	ncRNA	differentiation antagonizing non-protein coding RNA	53580305	53580305	53578560,53578990,53579660	53578694,53579126,53580305
+chr12	96252708	96260238	SNRPF	61	+	union_6636	6636	protein-coding	small nuclear ribonucleoprotein polypeptide F	96252851	96259849	96252708,96254945,96259101,96259782	96252854,96255071,96259166,96260238
+chr17	1367479	1396001	MYO1C	69	-	union_4641	4641	protein-coding	myosin IC	1369019	1395781	1367479,1370535,1370773,1371133,1371281,1371546,1371696,1372824,1373468,1373728,1373914,1374364,1374516,1375200,1375416,1377903,1378105,1378231,1380798,1381184,1381380,1381703,1381909,1382724,1382885,1383820,1383999,1385771,1386154,1386903,1387441,1388987,1394893,1395706	1369046,1370635,1370871,1371204,1371417,1371602,1371790,1372908,1373628,1373813,1373983,1374441,1374630,1375318,1375522,1377984,1378152,1378326,1380890,1381265,1381486,1381786,1382029,1382796,1382999,1383919,1384179,1385852,1386353,1387019,1387597,1389051,1394972,1396001
+chr1	47427035	47516426	CYP4X1	9	+	union_260293	260293	protein-coding	cytochrome P450 family 4 subfamily X member 1	47427254	47515846	47427035,47469911,47489239,47495661,47497107,47498912,47501477,47501688,47504331,47505013,47512138,47514236,47515093,47515671,47515671	47427428,47470041,47489666,47495803,47497152,47499040,47501605,47501843,47504438,47505204,47512272,47514301,47515176,47516423,47516426
+chr10	11358795	11386673	CELF2-AS1	2	-	union_414196	414196	ncRNA	CELF2 antisense RNA 1	11386673	11386673	11358795,11365532,11386576	11361173,11365630,11386673
+chr2	112812799	112876895	TMEM87B	11	+	union_84910	84910	protein-coding	transmembrane protein 87B	112813168	112873720	112812799,112817553,112821738,112824512,112832488,112834768,112838633,112838911,112843581,112847201,112849288,112854620,112854809,112856171,112858198,112863578,112865364,112870475,112873660	112813333,112817614,112821830,112824644,112832539,112834859,112838695,112839095,112843681,112847295,112849360,112854729,112854868,112856275,112858272,112863652,112865417,112870506,112876895
+chr6	40346162	40347631	TDRG1	6	+	union_732253	732253	ncRNA	testis development related 1 (non-protein coding)	40347631	40347631	40346162,40347020	40346636,40347631
+chr1	120839004	120855681	FAM72B	3	+	union_653820	653820	protein-coding	family with sequence similarity 72 member B	120839833	120854586	120839004,120839411,120841974,120845994,120854491	120839985,120839865,120842052,120846119,120855681
+chr3	119884327	119963142	GPR156	6	-	union_165829	165829	protein-coding	G protein-coupled receptor 156	119885878	119962945	119884327,119892158,119899971,119904145,119905504,119905516,119911785,119912141,119962486,119962849	119887231,119892317,119900208,119904241,119905630,119905630,119911896,119912271,119962623,119963142
+chr1	115215719	115238239	AMPD1	87	-	union_270	270	protein-coding	adenosine monophosphate deaminase 1	115215734	115238191	115215719,115216259,115216529,115217372,115218150,115218497,115219971,115220530,115220953,115222199,115222879,115226819,115229365,115231181,115236056,115238070	115215893,115216370,115216703,115217493,115218314,115218624,115220135,115220662,115221148,115222329,115223099,115226985,115229531,115231362,115236068,115238239
+chr1	110162434	110174677	AMPD2	28	+	union_271	271	protein-coding	adenosine monophosphate deaminase 2	110162890	110173774	110162434,110163202,110163535,110166609,110167924,110168048,110168283,110168781,110168940,110169347,110169796,110170050,110170395,110170704,110170985,110171264,110171730,110171948,110172417,110172854,110173304,110173564	110162900,110163888,110163888,110166711,110168055,110168414,110168414,110168850,110169049,110169534,110169938,110170140,110170525,110170899,110171117,110171428,110171857,110172112,110172538,110173028,110173415,110174677
diff -r 000000000000 -r 8a435cbdfe3f test-data/test.bw
Binary file test-data/test.bw has changed
diff -r 000000000000 -r 8a435cbdfe3f test-data/test.multires.bw
Binary file test-data/test.multires.bw has changed