Mercurial > repos > sblanck > smagexp

diff ImportDataFromMatrix.xml @ 38:c08b824e40cc draft

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planemo upload for repository https://github.com/sblanck/smagexp/tree/master/smagexp_tools commit 86c0c3bb957558f14e9400171640bf5a5c6605c9
author sblanck
date Mon, 25 Jun 2018 05:25:40 -0400
parents 3d867f8a07ef
children
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--- a/ImportDataFromMatrix.xml	Mon Jun 25 04:11:22 2018 -0400
+++ b/ImportDataFromMatrix.xml	Mon Jun 25 05:25:40 2018 -0400
@@ -4,10 +4,7 @@
 
     <requirements>
         <requirement type="package">bioconductor-biobase</requirement>
-        <requirement type="package">bioconductor-geoquery</requirement>
-        <requirement type="package">bioconductor-geometadb</requirement>
         <requirement type="package">bioconductor-limma</requirement>
-        <requirement type="package">bioconductor-biobase</requirement>
         <requirement type="package">bioconductor-affy</requirement>
         <requirement type="package">bioconductor-affyplm</requirement>
         <requirement type="package">r-jsonlite</requirement>
@@ -26,7 +23,6 @@
         ${__tool_directory__}/ImportDataFromMatrix.R
             --input $input
             --normalization $normalization
-            --conditions $conditions
             --annotations $annotations
             --rdataoutput $result_export_eset
             --htmloutput $result_html
@@ -42,7 +38,6 @@
             <option value="log2">log2 only</option>
             <option value="none">none</option>
         </param>
-        <param name="conditions" type="data" format="cond" label="Conditions" help="conditions associated with the input file"/>
         <param name="annotations" type="text" label="Annotation GPL code" help="GPL code for annotations"/>		
     </inputs>