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diff Analyse.R @ 10:56267e3293b2 draft

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planemo upload commit 0ad899de37d891f387912b7abd63506605a25976-dirty
author sblanck
date Thu, 11 May 2017 08:31:34 -0400
parents f3c021bdc000
children f9732f6bf218
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--- a/Analyse.R	Wed May 10 08:12:48 2017 -0400
+++ b/Analyse.R	Thu May 11 08:31:34 2017 -0400
@@ -120,8 +120,8 @@
 
 gpl <- annotation(eset)
 if (substr(x = gpl,1,3)!="GPL"){
-	#if the annotation info does not start with "GPL" we retrieve the correspondin GPL annotation
-	mapping=read.csv("/galaxy-tools/transcriptomics/db/gplToBioc.csv",stringsAsFactors=FALSE)
+	#if the annotation info does not start with "GPL" we retrieve the corresponding GPL annotation
+	mapping=read.csv("gplToBioc.csv",stringsAsFactors=FALSE)
 	gpl=mapping[which(mapping$bioc_package==annotation(eset)),]$gpl
 	gpl=gpl[1]