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comparison Analyse.R @ 7:f3c021bdc000 draft

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use optparse
author sblanck
date Wed, 12 Apr 2017 03:47:05 -0400
parents a2b8c2aabeb0
children 56267e3293b2
comparison
equal deleted inserted replaced
6:a2b8c2aabeb0 7:f3c021bdc000
47 suppressPackageStartupMessages(require(GEOmetadb)) 47 suppressPackageStartupMessages(require(GEOmetadb))
48 suppressPackageStartupMessages(require(limma)) 48 suppressPackageStartupMessages(require(limma))
49 suppressPackageStartupMessages(require(jsonlite)) 49 suppressPackageStartupMessages(require(jsonlite))
50 suppressPackageStartupMessages(require(affy)) 50 suppressPackageStartupMessages(require(affy))
51 suppressPackageStartupMessages(require(dplyr)) 51 suppressPackageStartupMessages(require(dplyr))
52
53 cargs<-commandArgs()
54 cargs<-cargs[(which(cargs=="--args")+1):length(cargs)]
55 nbargs=length(cargs)
56 52
57 load(opt$rdatainput) 53 load(opt$rdatainput)
58 targetFile=opt$conditions 54 targetFile=opt$conditions
59 condition1Name=opt$selectcondition1 55 condition1Name=opt$selectcondition1
60 #condition1=opt$condition1 56 #condition1=opt$condition1