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annotate MetaMa_tpl.html @ 39:07ac07715f22 draft default tip
planemo upload for repository https://github.com/sblanck/smagexp/tree/master/smagexp_tools commit 7026b0fbe3611962c37c7f9b5f001434f059e32c
| author | sblanck |
|---|---|
| date | Tue, 26 Jun 2018 04:14:25 -0400 |
| parents | 22e1325aaa88 |
| children |
| rev | line source |
|---|---|
| 2 | 1 <!DOCTYPE html> |
| 2 <html> | |
| 3 <head> | |
| 4 <meta http-equiv="Content-type" content="text/html; charset=utf-8"> | |
| 5 <meta name="viewport" content="width=device-width,initial-scale=1"> | |
| 6 <title>DataTables example - Ajax sourced data</title> | |
| 7 <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/1.10.10/css/jquery.dataTables.min.css"> | |
| 8 <link rel="stylesheet" type="text/css" href="https://cdn.datatables.net/buttons/1.1.0/css/buttons.dataTables.min.css"> | |
| 9 | |
| 10 <!--link rel="stylesheet" type="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.6/css/bootstrap.min.css"> | |
| 11 <link rel="stylesheet" type="https://cdn.datatables.net/1.10.11/css/dataTables.bootstrap.min.css"--> | |
| 12 | |
| 13 <style type="text/css" class="init"> | |
| 14 | |
| 15 td.details-control { | |
| 16 background: url('../../../static/images/fugue/toggle-expand.png') no-repeat center center; | |
| 17 cursor: pointer; | |
| 18 } | |
| 19 tr.shown td.details-control { | |
| 20 background: url('../../../static/images/fugue/toggle.png') no-repeat center center; | |
| 21 } | |
| 22 | |
| 23 .dataTable th,.dataTable td { | |
| 24 | |
| 25 text-overflow: ellipsis; | |
| 26 max-width: 200px; | |
| 27 min-width: 40px; | |
| 28 -o-text-overflow: ellipsis; | |
| 29 -ms-text-overflow: ellipsis; | |
| 30 -moz-text-overflow: ellipsis; | |
| 31 width: 100px; | |
| 32 white-space:nowrap; | |
| 33 overflow: hidden; | |
| 34 | |
| 35 | |
| 36 padding: 10px; | |
| 37 | |
| 38 } | |
| 39 | |
| 40 | |
| 41 </style> | |
| 42 | |
| 43 <script type="text/javascript" language="javascript" src="https://code.jquery.com/jquery-1.12.0.min.js"> | |
| 44 </script> | |
| 45 <script type="text/javascript" language="javascript" src="https://cdn.datatables.net/1.10.11/js/jquery.dataTables.min.js"> | |
| 46 </script> | |
| 47 <!--script type="text/javascript" language="javascript" src="https://cdn.datatables.net/1.10.11/js/dataTables.bootstrap.min.js"> | |
| 48 </script--> | |
| 49 <script type="text/javascript" language="javascript" src="https://cdn.datatables.net/buttons/1.1.0/js/dataTables.buttons.min.js"> | |
| 50 </script> | |
| 51 <script type="text/javascript" language="javascript" src="https://cdn.datatables.net/buttons/1.1.0/js/buttons.flash.min.js"> | |
| 52 </script> | |
| 53 <script type="text/javascript" language="javascript" src="https://cdnjs.cloudflare.com/ajax/libs/jszip/2.5.0/jszip.min.js"> | |
| 54 </script> | |
| 55 <script type="text/javascript" language="javascript" src="https://cdn.rawgit.com/bpampuch/pdfmake/0.1.18/build/pdfmake.min.js"> | |
| 56 </script> | |
| 57 <script type="text/javascript" language="javascript" src="https://cdn.rawgit.com/bpampuch/pdfmake/0.1.18/build/vfs_fonts.js"> | |
| 58 </script> | |
| 59 <script type="text/javascript" language="javascript" src="https://cdn.datatables.net/buttons/1.1.0/js/buttons.html5.min.js"> | |
| 60 </script> | |
| 61 <script type="text/javascript" class="init"> | |
| 62 | |
| 63 | |
| 64 | |
| 65 function format ( d ) { | |
| 66 // `d` is the original data object for the row | |
| 67 var test=d[6].split("///"); | |
| 68 var strLength=test.length; | |
| 69 var result=""; | |
| 70 for (var i=0;i<strLength;i++) { | |
| 71 result=result+'<a href="http://amigo.geneontology.org/amigo/term/'+test[i]+'">'+test[i]+'</a>'+', '; | |
| 72 } | |
| 73 return '<table cellpadding="5" cellspacing="0" border="0" style="padding-left:50px;">'+ | |
| 74 '<tr>'+ | |
| 75 '<td>Gene Symbol:</td>'+ | |
| 76 '<td style="width:100%;overflow: hidden;white-space: normal;">'+'<a href="http://www.ncbi.nlm.nih.gov/gene/'+d[4]+'">'+d[2]+'</a>'+'</td>'+ | |
| 77 '</tr>'+ | |
| 78 '<tr>'+ | |
| 79 '<td>Gene Title:</td>'+ | |
| 80 '<td style="width:100%;overflow: hidden;white-space: normal;">'+d[3]+'</td>'+ | |
| 81 '</tr>'+ | |
| 82 '<tr>'+ | |
| 83 '<td>GO Function ID:</td>'+ | |
| 84 '<td style="width:100%;overflow: hidden;white-space: normal;">'+result+'</td>'+ | |
| 85 '</tr>'+ | |
| 86 '</table>'; | |
| 87 } | |
| 88 | |
| 89 var dataSet=###DATAJSON###; | |
| 90 var summarySet=###SUMMARYJSON###; | |
| 91 | |
| 92 $(document).ready(function() { | |
| 93 var table = $('#example').DataTable( { | |
| 94 "scrollX": true, | |
| 95 data: dataSet, | |
| 96 "columns": [ | |
| 97 { | |
| 98 "className": 'details-control', | |
| 99 "orderable": false, | |
| 100 "data": null, | |
| 101 "defaultContent": '' | |
| 102 }, | |
| 103 {title : "ID" }, | |
| 104 {title : "Gene_symbol"}, | |
| 105 {title : "Gene_title"}, | |
| 106 {title : "Gene_ID"}, | |
| 107 {title : "Chromosome_annotation"}, | |
| 108 {title : "GO_Function_ID"} | |
| 109 | |
| 110 ], | |
| 111 | |
| 112 dom: 'Bfrtlip', | |
| 113 buttons: [ | |
| 114 'copy', 'csv', 'excel' | |
| 115 ] | |
| 116 | |
| 117 } ); | |
| 118 | |
| 119 // Add event listener for opening and closing details | |
| 120 $('#example tbody').on('click', 'td.details-control', function () { | |
| 121 var tr = $(this).closest('tr'); | |
| 122 var row = table.row( tr ); | |
| 123 | |
| 124 if ( row.child.isShown() ) { | |
| 125 // This row is already open - close it | |
| 126 row.child.hide(); | |
| 127 tr.removeClass('shown'); | |
| 128 } | |
| 129 else { | |
| 130 // Open this row | |
| 131 row.child( format(row.data()) ).show(); | |
| 132 tr.addClass('shown'); | |
| 133 } | |
| 134 } ); | |
| 135 } ); | |
| 136 | |
| 137 | |
| 138 | |
| 139 $(document).ready(function() { | |
| 140 $('#summary').DataTable( { | |
| 141 "columnDefs": [ | |
| 142 { className: "dt-center", targets: '_all' } | |
| 143 ], | |
| 144 "paging": false, | |
| 145 "ordering": false, | |
| 146 "info": false, | |
| 147 "searching": false, | |
| 148 data: summarySet, | |
| 149 "columns": [ | |
| 150 {title : "DE" }, | |
| 151 {title : "IDD" }, | |
| 152 {title : "Loss" }, | |
| 153 {title : "IDR" }, | |
| 154 {title : "IRR" }, | |
| 155 | |
| 156 | |
| 157 ], | |
| 158 | |
| 159 } ); | |
| 160 } ); | |
| 161 | |
| 162 | |
| 163 | |
| 164 </script> | |
| 165 </head> | |
| 166 | |
| 167 <body> | |
| 168 | |
| 169 <table><tr><td> | |
|
36
22e1325aaa88
planemo upload for repository https://github.com/sblanck/smagexp/tree/master/smagexp_tools commit 0d3497e4f84869670647f7a6ffceca64469a4c00
sblanck
parents:
2
diff
changeset
|
170 <h2>###TITLE###</h2> |
|
22e1325aaa88
planemo upload for repository https://github.com/sblanck/smagexp/tree/master/smagexp_tools commit 0d3497e4f84869670647f7a6ffceca64469a4c00
sblanck
parents:
2
diff
changeset
|
171 <img src='###VENN###' height="500" width=###WIDTH###><br/> |
| 2 | 172 </td><td> |
| 173 | |
| 174 </td></tr></table> | |
| 175 | |
| 176 <h2>Summary</h2> | |
| 177 <table id="summary" class="compact stripe row-border" cellspacing="0" width="100%"> </table> | |
| 178 </br> | |
| 179 DE : Number of differentially expressed genes </br> | |
| 180 IDD (Integration Driven discoveries) : number of genes that are declared DE in the meta-analysis that were not identified in any of the individual studies alone</br> | |
| 181 Loss : Number of genes that are identified DE in individual studies but not in meta-analysis </br> | |
| 182 IDR (Integration-driven Discovery Rate) : corresponding proportions of IDD </br> | |
| 183 IRR (Integration-driven Revision) : corresponding proportions of Loss</br> | |
| 184 <h2>Details</h2> | |
| 185 <table id="example" class="compact stripe row-border" cellspacing="0" width="100%"> | |
| 186 </table> | |
| 187 </body> | |
| 188 </html> |