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1 import os
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2 import sys
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3 import subprocess
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4
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5 def main():
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6
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7 inputdata=sys.argv[1]
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8 response=sys.argv[2]
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9 tmp_dir=sys.argv[3]
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10 nbfold=sys.argv[4]
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11 loss=sys.argv[5]
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12 outputlog=sys.argv[6]
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13 output=sys.argv[7]
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14 log=sys.argv[8]
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15
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16 script_dir=os.path.dirname(os.path.abspath(__file__))
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17
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18 if (outputlog=="TRUE"):
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19 errfile=open(log,'w')
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20 else:
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21 errfile=open(os.path.join(tmp_dir,"errfile.log"),'w')
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22
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23
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24 retcode=subprocess.call(["Rscript", os.path.join(script_dir,"markersSelection.R"), inputdata, response, tmp_dir, nbfold, loss, output], stdout = errfile, stderr = errfile)
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25
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26 # if (plot=="TRUE"):
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27 # shutil.copy(os.path.join(tmp_dir,"mpagenomics","Rplots.pdf"), pdffigures)
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28
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29 errfile.close()
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30
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31 sys.exit(retcode)
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32
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33 if __name__ == "__main__":
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34 main() |
