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5
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1 import os
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2 import sys
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3 import subprocess
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4
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5 def main():
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6
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7 tmp_dir=sys.argv[4]
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8 outputlog=sys.argv[7]
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9 log=sys.argv[8]
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10 script_dir=os.path.dirname(os.path.abspath(__file__))
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11
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12 if (outputlog=="TRUE"):
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13 errfile=open(log,'w')
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14 else:
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15 errfile=open(os.path.join(tmp_dir,"errfile.log"),'w')
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16
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17
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18 retcode=(subprocess.call(["Rscript", os.path.join(script_dir,"filter.R"), sys.argv[1], sys.argv[2], sys.argv[3], sys.argv[4], sys.argv[5], sys.argv[6]], stdout = errfile, stderr = errfile))
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19 errfile.close();
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20 sys.exit(retcode)
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21
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22 if __name__ == "__main__":
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23 main() |
