Mercurial > repos > sblanck > mpagenomics_datatypes

changeset 5:253567c69751 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 11d660a2de749dae548b2fae0dd81f9f2b2c4b4f
author sblanck
date Thu, 09 Apr 2020 15:21:37 +0000
parents 01ed87d03039
children
files datatypes_conf.xml datatypesmpa.py
diffstat 2 files changed, 11 insertions(+), 57 deletions(-) [+]
line wrap: on
line diff
--- a/datatypes_conf.xml	Mon Jun 15 15:23:29 2015 +0200
+++ b/datatypes_conf.xml	Thu Apr 09 15:21:37 2020 +0000
@@ -1,27 +1,18 @@
 <?xml version="1.0"?>
 <datatypes>
-    <datatype_files>
-        <datatype_file name="datatypesmpa.py"/>
-    </datatype_files>
     <registration>
-        <!--MPAgenomics extensions-->    
-	<datatype extension="cel" type="galaxy.datatypes.datatypesmpa:Cel" mimetype="application/octet-stream" display_in_upload="true" />
-    <datatype extension="cdf" type="galaxy.datatypes.datatypesmpa:Cdf" mimetype="application/octet-stream" display_in_upload="true" />
-    <datatype extension="ufl" type="galaxy.datatypes.datatypesmpa:Ufl" mimetype="application/octet-stream" display_in_upload="true" />
-    <datatype extension="ugp" type="galaxy.datatypes.datatypesmpa:Ugp" mimetype="application/octet-stream" display_in_upload="true" />
-    <datatype extension="acs" type="galaxy.datatypes.datatypesmpa:Acs" mimetype="application/octet-stream" display_in_upload="true" />
-	<!--dataset summary file-->
-    <datatype extension="dsf" type="galaxy.datatypes.data:Text" subclass="True" display_in_upload="false"/> 
-	<!--log file-->
-    <datatype extension="log" type="galaxy.datatypes.data:Text" subclass="True" display_in_upload="false"/>
+        <datatype extension="cdf" type="galaxy.datatypes.binary:Binary" subclass="True" display_in_upload="true" />
+    	<datatype extension="ufl" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" />
+    	<datatype extension="ugp" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" />
+    	<datatype extension="acs" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" />
+    	<datatype extension="dsf" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="false"/> 
+    	<datatype extension="log" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="false"/>
 	<!--segmentation and calling result file-->
-	<datatype extension="scr" type="galaxy.datatypes.data:Text" subclass="True" display_in_upload="false"/>
+	<datatype extension="scr" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="false"/>
 	<!--segmentation allele b fraction result file-->
-	<datatype extension="sar" type="galaxy.datatypes.data:Text" subclass="True" display_in_upload="false"/>
+	<datatype extension="sar" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="false"/>
 	<!-- signal extraction file-->
-	<datatype extension="sef" type="galaxy.datatypes.data:Text" subclass="True" display_in_upload="true"/>	
-	<!--End MPAgenomics extensions-->        
-    </registration>
-  
-    
+	<datatype extension="sef" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true"/>
+	<!--End MPAgenomics extensions-->     
+     </registration>
 </datatypes>
--- a/datatypesmpa.py	Mon Jun 15 15:23:29 2015 +0200
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,37 +0,0 @@
-from galaxy.datatypes import data
-from galaxy.datatypes.binary import Binary
-
-class Cel( Binary ):
-    """Class for generic CEL binary format"""
-    file_ext = "cel"
-
-#Binary.register_unsniffable_binary_ext("cel")
-Binary.register_sniffable_binary_format("cel", "cel", Cel)
-
-class Cdf( Binary ):
-    """Class for generic cdf binary format"""
-    file_ext = "cdf"
-
-#Binary.register_unsniffable_binary_ext("cdf")
-Binary.register_sniffable_binary_format("cdf", "cdf", Cdf)
-
-class Ufl( Binary ):
-    """Class for generic ufl binary format"""
-    file_ext = "ufl"
-Binary.register_sniffable_binary_format("ufl", "ufl", Ufl)
-
-#Binary.register_unsniffable_binary_ext("ufl")
-
-class Ugp( Binary ):
-    """Class for generic ugp binary format"""
-    file_ext = "ugp"
-Binary.register_sniffable_binary_format("ugp", "ugp", ugp)
-#Binary.register_unsniffable_binary_ext("ugp")
-
-class Acs( Binary ):
-    """Class for generic acs binary format"""
-    file_ext = "acs"
-
-Binary.register_sniffable_binary_format("acs", "acs", acs)
-
-#Binary.register_unsniffable_binary_ext("acs")
\ No newline at end of file