Mercurial > repos > sblanck > meta_ma

diff GEOQuery.xml @ 0:27ffdb495852 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Imported from capsule None
author sblanck
date Wed, 13 Apr 2016 07:40:02 -0400
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GEOQuery.xml	Wed Apr 13 07:40:02 2016 -0400
@@ -0,0 +1,27 @@
+<tool id="GEOQuery" name="GEOQuery">
+	<description>GEOQuery wrapper</description>
+	<requirements>
+	  <container type="docker">sblanck/testtool:latest</container>
+	</requirements>
+	<command>
+		/galaxy-tools/stderr_wrapper.py Rscript /galaxy-tools/transcriptomics/GEOquery/GEOQuery.R $GEOQueryID $GEOQueryData $GEOQueryRData $conditions
+	</command>
+
+	<inputs>
+		<param name="GEOQueryID" type="text" size="12" optional="false" label="GEOQuery ID" help="">
+			<validator type="empty_field"/>
+		</param>
+
+	</inputs>
+
+	<outputs>
+		<data format="tabular" name="GEOQueryData" label="GEOQuery Data of ${GEOQueryID}"/>
+		<data format="cond" name="conditions" label="conditions of ${GEOQueryID}"/>
+        <data format="rdata" name="GEOQueryRData" label="GEOQuery RData of ${GEOQueryID}"/>		
+	</outputs>
+
+	<help>
+		
+	</help>
+
+</tool>