Mercurial > repos > sauria > package_hifive_1_3

changeset 0:b527d80af108 draft default tip

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planemo upload for repository https://github.com/bxlab/galaxy_tools/packages/package_hifive_1_3 commit 9e84395b3ae2adcc5b5cd9f0a32e59bf2e2f11b0
author sauria
date Fri, 13 Jan 2017 13:46:46 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 53 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jan 13 13:46:46 2017 -0500
@@ -0,0 +1,53 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="scipy" version="0.12.0">
+        <repository changeset_revision="63808602082c" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="numpy" version="1.7.1">
+        <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="cython" version="0.20.1">
+        <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="h5py" version="2.5.0">
+        <repository changeset_revision="3b17bd6fa3ae" name="package_h5py_2_5_0" owner="sauria" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="hifive" version="1.3">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">https://pypi.python.org/packages/source/h/hifive/hifive-1.3.0.tar.gz</action>
+                
+                <action type="set_environment_for_install">
+                    <repository changeset_revision="63808602082c" name="package_scipy_0_12" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="scipy" version="0.12.0" />
+                    </repository>
+                    <repository changeset_revision="5c489d2d630b" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.7.1" />
+                    </repository>
+                    <repository changeset_revision="749f11b9358a" name="package_cython_0_20_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="cython" version="0.20.1" />
+                    </repository>
+                    <repository changeset_revision="3b17bd6fa3ae" name="package_h5py_2_5_0" owner="sauria" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="h5py" version="2.5.0" />
+                    </repository>
+                </action>
+
+                <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                <action type="make_directory">$INSTALL_DIR/bin</action>
+                <action type="shell_command">
+                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
+                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+                </action>
+
+                <action type="set_environment">
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python/site-packages</environment_variable>
+                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                    </action>
+            </actions>
+        </install>
+        <readme>
+            Compiling hifive requires cython.
+        </readme>
+    </package>
+</tool_dependency>