# HG changeset patch # User sauria # Date 1429214270 14400 # Node ID a1d09ab090bb7c6df6fdcfe88a7a2cc405695fe5 # Parent a1ab64129a04a6143a8e1ef7edc7655bc49bc987 Uploaded diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/complete_fivec_project.xml --- a/hifive/hifive/complete_fivec_project.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/complete_fivec_project.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython from start to finish, including creating a fragmentset, dataset, and corrected HiFive 5C project diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/complete_hic_project.xml --- a/hifive/hifive/complete_hic_project.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/complete_hic_project.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython from start to finish, including creating a fendset, dataset, and corrected HiFive HiC project diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_fivec_dataset.xml --- a/hifive/hifive/create_fivec_dataset.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_fivec_dataset.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create a HiFive 5C data object diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_fivec_fragmentset.xml --- a/hifive/hifive/create_fivec_fragmentset.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_fivec_fragmentset.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create a HiFive fragment object hifive fragments -q $input $output diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_fivec_heatmap.xml --- a/hifive/hifive/create_fivec_heatmap.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_fivec_heatmap.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create an hdf5 dictionary of heatmaps for a HiFive 5C project diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_fivec_project.xml --- a/hifive/hifive/create_fivec_project.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_fivec_project.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create a HiFive 5C project object diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_hic_dataset.xml --- a/hifive/hifive/create_hic_dataset.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_hic_dataset.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create a HiFive HiC data object diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_hic_fendset.xml --- a/hifive/hifive/create_hic_fendset.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_hic_fendset.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create a HiFive fend object hifive fends -q --bed $input $output diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_hic_heatmap.xml --- a/hifive/hifive/create_hic_heatmap.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_hic_heatmap.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create an hdf5 dictionary of heatmaps for a HiFive HiC project diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/create_hic_project.xml --- a/hifive/hifive/create_hic_project.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/create_hic_project.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create a HiFive HiC project object diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/get_interval_fivec_data.xml --- a/hifive/hifive/get_interval_fivec_data.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/get_interval_fivec_data.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create an interval file containing 5C data diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/get_interval_hic_data.xml --- a/hifive/hifive/get_interval_hic_data.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/get_interval_hic_data.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython create an interval file containing HiC data diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/learn_fivec_normalization.xml --- a/hifive/hifive/learn_fivec_normalization.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/learn_fivec_normalization.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython learn fragment normalization values using probablistic approach diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/learn_hic_normalization.xml --- a/hifive/hifive/learn_hic_normalization.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/learn_hic_normalization.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - - - - + hifive + numpy + scipy + h5py + cython learn fend normalization values using probablistic approach diff -r a1ab64129a04 -r a1d09ab090bb hifive/hifive/tool_dependencies.xml --- a/hifive/hifive/tool_dependencies.xml Thu Apr 16 15:17:35 2015 -0400 +++ b/hifive/hifive/tool_dependencies.xml Thu Apr 16 15:57:50 2015 -0400 @@ -1,10 +1,10 @@ - - + + - - + + @@ -13,7 +13,7 @@ - + $REPOSITORY_INSTALL_DIR