view macros.xml @ 3:52a70ef5248c draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 568023f8019f928a6f335951806c0c4a03f21320

<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="1.36.1">mothur</requirement>
        </requirements>
    </xml>
    <xml name="version_command">
        <version_command>mothur "#help()" | sed '7q;d' | cut -d" " -f2 </version_command>
    </xml>
    <token name="@WRAPPER_VERSION@">1.36.1</token>
    <token name="@MOTHUR_OVERVIEW@">
<![CDATA[

**Mothur Overview**

Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team
in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki_.

.. _Mothur-Wiki: http://www.mothur.org/wiki/Main_Page

]]>
    </token>
    <xml name="labeloptions">
        <options>
            <filter type="data_meta" ref="otu" key="labels"/>
        </options>
    </xml>
    <xml name="logfile-test">
        <output name="logfile" ftype="txt">
            <assert_contents>
                <has_text text="mothur"/>
                <has_text text="@WRAPPER_VERSION@"/>
            </assert_contents>
        </output>
    </xml>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1128/AEM.01541-09</citation>
            <yield/>
        </citations>
    </xml>
</macros>