Mercurial > repos > saskia-hiltemann > mothur_align_check

annotate tool-data/mothur_aligndb.loc.sample @ 8:5eb3186cc3b4 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 8f2b9b6c89892710bd5e0d8e35bcd8b645b0e44f
author saskia-hiltemann
date Tue, 07 Jun 2016 10:47:17 -0400
parents 48b3a755bd02
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48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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1 #This is a sample file distributed with Galaxy that enables tools
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
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2 #to use a directory of metagenomics files.
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
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3 #file has this format (white space characters are TAB characters):
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
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4 #
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
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5 # Reference Alignments: http://www.mothur.org/wiki/Alignment_database
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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6 #
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
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7 #<dbname> <file_base>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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8 #
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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9 #greengenes /project/db/galaxy/mothur/core_set_aligned.imputed.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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10 #silva archaea /project/db/galaxy/mothur/Silva.archaea/silva.archaea.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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11 #silva bacteria /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
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12 #silva eukarya /project/db/galaxy/mothur/silva.eukarya.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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13 #silva archaea nogap /project/db/galaxy/mothur/Silva.archaea/nogap.archaea.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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14 #silva bacteria nogap /project/db/galaxy/mothur/silva.bacteria/nogap.bacteria.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
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15 #silva eukarya nogap /project/db/galaxy/mothur/nogap.eukarya.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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16 #FungiLSU_train_1400bp_8506_mod.fasta /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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17 #trainset6_032010.rdp.fasta /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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18 #trainset7_112011.pds.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.pds.fasta
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
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19 #trainset7_112011.rdp.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.fasta