Mercurial > repos > saskia-hiltemann > mothur_align_check

annotate test-data/biosample.xml @ 8:5eb3186cc3b4 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 8f2b9b6c89892710bd5e0d8e35bcd8b645b0e44f
author saskia-hiltemann
date Tue, 07 Jun 2016 10:47:17 -0400
parents 48b3a755bd02
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
1 <BioSampleAttributes>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
2 <Attribute>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
3 <Name>EDTA inhibitor tested</Name>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
4 <HarmonizedName>edta_inhibitor_tested</HarmonizedName>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
5 <Description>Was carbapenemase activity tested in the presence of EDTA? If carbapenemase activity was tested in the presence of EDTA, the response should be "yes", otherwise "no”.</Description>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
6 <Format>['', 'yes', 'no', 'missing', 'not applicable', 'not collected']</Format>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
7 <Synonym>edta inhibitor tested</Synonym>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
8 <Package use="mandatory">Beta-lactamase.1.0</Package>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
9 </Attribute>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
10 <Attribute>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
11 <Name>FAO classification</Name>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
12 <HarmonizedName>fao_class</HarmonizedName>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
13 <Description>soil classification from the FAO World Reference Database for Soil Resources</Description>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
14 <Format>{term}</Format>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
15 <Synonym>fao class</Synonym>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
16 <Synonym>fao classification</Synonym>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
17 <Synonym>soil taxonomic/fao classification</Synonym>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
18 <Package use="optional" group_name="Soil">MIGS.ba.soil.4.0</Package>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
19 <Package use="optional" group_name="Soil">MIGS.eu.soil.4.0</Package>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
20 <Package use="optional" group_name="Soil">MIGS.vi.soil.4.0</Package>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
21 <Package use="optional" group_name="Soil">MIMARKS.specimen.soil.4.0</Package>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
22 <Package use="optional" group_name="Soil">MIMARKS.survey.soil.4.0</Package>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
23 <Package use="optional" group_name="Soil">MIMS.me.soil.4.0</Package>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
24 </Attribute>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
25 <Attribute>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
26 <Name>HIV status</Name>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
27 <HarmonizedName>hiv_stat</HarmonizedName>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
28 <Description>HIV status of subject, if yes HAART initiation status should also be indicated as [YES or NO]</Description>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
29 <Format>{boolean};{boolean}</Format>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
30 <Synonym>hiv stat</Synonym>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
31 <Synonym>hiv status</Synonym>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
32 </Attribute>
48b3a755bd02 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ecf9d5a72087f0a50a97b183162f10b81dfd9160-dirty
saskia-hiltemann
parents:
diff changeset
33 </BioSampleAttributes>