Mercurial > repos > saskia-hiltemann > ireport_devel
diff createHTML.sh @ 3:945e72d0e723 draft
Uploaded
| author | saskia-hiltemann |
|---|---|
| date | Wed, 15 Jul 2015 09:21:59 -0400 |
| parents | d582e2cd3e13 |
| children | 363cd315d0e9 |
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--- a/createHTML.sh Wed Jul 15 09:18:45 2015 -0400 +++ b/createHTML.sh Wed Jul 15 09:21:59 2015 -0400 @@ -432,7 +432,7 @@ if [ $fancy == "Y" ] then perl ${repositorypath}/tsv2html.pl < ${tsvfile}2 > ${galaxypath}/htmltable_${fname}.html - contentline="${contentline}\n<iframe class=\"invisibleframe fancyiframe\" id=\"$iframeid\" src=\"htmltable_${fname}.html\" width=\"100%\" style=\"height: 350px; min-height: ${minh}px !important; overflow-y: hidden; overflow-x: scroll\" ></iframe>" + contentline="${contentline}\n<iframe class=\"invisibleframe fancyiframe\" id=\"$iframeid\" src=\"htmltable_${fname}.html\" width=\"100%\" style=\"height: 760px; min-height: ${minh}px !important; overflow-y: hidden; overflow-x: scroll\" ></iframe>" iframecount=$[$iframecount+1] else perl ${repositorypath}/tsv2html_simple.pl < ${tsvfile}2 > ${galaxypath}/htmltable_${fname}.html @@ -632,21 +632,6 @@ fi - if [[ $ftype == "bigbed" ]] - then - newgbfilename="${fname}.bigbed" - - cp ${gbfilename} "${galaxypath}/${newgbfilename}" - #bgzip "${galaxypath}/${newgbfilename}" - #tabix -f -p bed "${galaxypath}/${newgbfilename}.gz" - - userTracks="${userTracks}, - {name: '${gbfilelabel}', - bwgURI: '${servername}/datasets/${apiid}/display/${newgbfilename}'} - " - - fi - if [[ $ftype == "bedtabix" ]] then newgbfilename="${fname}.bed"