annotate README.md @ 1:d582e2cd3e13 draft

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author saskia-hiltemann
date Wed, 15 Jul 2015 08:52:21 -0400
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1 iReport
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2 =======
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4 iReport Galaxy tool - HTML reporting in Galaxy
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6 install to your Galaxy via the main tool shed: http://toolshed.g2.bx.psu.edu/
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7
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8 direct repository link: http://saskia-hiltemann@toolshed.g2.bx.psu.edu/repos/saskia-hiltemann/ireport
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10 email: s.hiltemann@erasmusmc.nl
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13 Installation Instructions
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14 --------------------------
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15 This package uses (but does not install) Bash, Perl and Python.
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17 If Pandoc ((johnmacfarlane.net/pandoc/index.html)) is installed on your system PATH (command 'pandoc'), any MarkDown text items will be rendered using Pandoc (allows many markdown syntax extensions).
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18 If Pandoc is not present, a simple markdown conversion script is used (only handles vanilla syntax).
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21 TODOs
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22 ---------------
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23 - ~~option to download iReport webpage~~
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24 - ~~markdown instead of plain text/html in text fields.~~
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25 - Support for large tables
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26 - Multiple columns in table converted to weblinks.
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27 - Table colums link to archive files in history
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28 - ..
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29 - ..suggestions?
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