diff README~ @ 0:46f7f689b929 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README~	Tue Sep 17 11:29:11 2013 -0400
@@ -0,0 +1,50 @@
+may need to manually install some perl modules as root:
+
+to see which modules already installed run:
+
+./test.modules 
+
+in bin directory of circos install dir. If missing modules, install using CPAN:
+
+cpan install Carp
+cpan install Clone
+cpan install Config::General
+cpan install Cwd
+cpan install Data::Dumper
+cpan install Digest::MD5
+cpan install File::Basename
+cpan install File::Spec::Functions
+cpan install File::Temp
+cpan install FindBin
+cpan install Font::TTF::Font
+cpan install GD
+cpan install GD::Image
+cpan install Getopt::Long
+cpan install IO::File
+cpan install List::MoreUtils
+cpan install List::Util
+cpan install Math::Round
+cpan install Math::VecStat
+cpan install Memoize
+cpan install Params::Validate
+cpan install Pod::Usage
+cpan install POSIX
+cpan install Readonly
+cpan install Regexp::Common
+cpan install Storable
+cpan install Sys::Hostname
+cpan install Text::Balanced
+cpan install Text::Format
+cpan install Time::HiRes
+
+
+####  Troubleshooting:  ####
+
+#when installing perl module GD, it may complain about libgd not being present, if so, do:      
+sudo apt-get -y install libgd2-xpm-dev build-essential
+
+#when running circos, may complain: "bad interpreter /bin/env: no such file or directory" ..easiest way is to create symlink:
+ln -s /usr/bin/env /bin/env
+
+
+