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1 may need to manually install some perl modules as root:
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2
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3 to see which modules already installed run:
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4
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5 ./test.modules
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6
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7 in bin directory of circos install dir. If missing modules, install using CPAN:
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8
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9 cpan install Carp
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10 cpan install Clone
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11 cpan install Config::General
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12 cpan install Cwd
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13 cpan install Data::Dumper
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14 cpan install Digest::MD5
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15 cpan install File::Basename
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16 cpan install File::Spec::Functions
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17 cpan install File::Temp
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18 cpan install FindBin
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19 cpan install Font::TTF::Font
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20 cpan install GD
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21 cpan install GD::Image
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22 cpan install Getopt::Long
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23 cpan install IO::File
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24 cpan install List::MoreUtils
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25 cpan install List::Util
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26 cpan install Math::Round
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27 cpan install Math::VecStat
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28 cpan install Memoize
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29 cpan install Params::Validate
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30 cpan install Pod::Usage
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31 cpan install POSIX
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32 cpan install Readonly
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33 cpan install Regexp::Common
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34 cpan install Storable
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35 cpan install Sys::Hostname
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36 cpan install Text::Balanced
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37 cpan install Text::Format
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38 cpan install Time::HiRes
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39
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40
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41
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42 #### Troubleshooting: ####
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43
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44 #when installing perl module GD, it may complain about libgd not being present, if so, do:
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45 sudo apt-get -y install libgd2-xpm-dev build-essential
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46
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47 #when running circos, may complain: "bad interpreter /bin/env: no such file or directory" ..easiest way is to create symlink, e.g.:
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48 ln -s /usr/bin/env /bin/env
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49
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50
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51
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