comparison intersect.xml @ 1:f8f16a682d01 draft

planemo upload for repository https://github.com/COMBAT-TB/vcf_snps_utils commit cfb04d59b0377b23ddc1264ddcf8677f2b191aa8

0:fc75be7f3fd2

 <?xml version="1.0"?>
<tool id="intersect" name="Intersect SNPs with a CSV file" version="@TOOL_VERSION@+galaxy0" profile="17.01">
  <description>Intersect SNPs with a CSV file</description>
   <macros>
    <import>vcf_snps_utils_macros.xml</import>
  </macros>
        
  <command detect_errors="exit_code"><![CDATA[
    ln -s '$input_vcf' data.vcf &&

  <tests>
    <test>
      <param name="input_vcf" value="sample1.vcf" />
      <output name="output" compare="diff" lines_diff="2" file="sample1.html" ftype="html" />
    </test>

  <help>

**What it does**

Intersect SNPs and generate an output report from a CSV file of knowned SNPs (workflow generated/annotated)

              "/tmp/vcf_snps_utils_output/"
  --help      Show this message and exit.

  vcf_snps_utils intersect example.vcf example.csv --out output/test

    </help>

</tool>

1:f8f16a682d01

 <?xml version="1.0"?>
<tool id="intersect" name="Intersect SNPs with a CSV file" version="@TOOL_VERSION@+galaxy0" profile="17.01">
  <description>Intersect SNPs with a CSV file</description>
  <macros>
    <import>vcf_snps_utils_macros.xml</import>
  </macros>
        
  <command detect_errors="exit_code"><![CDATA[
    ln -s '$input_vcf' data.vcf &&

  <tests>
    <test>
      <param name="input_vcf" value="sample1.vcf" />
      <output name="output" compare="diff" lines_diff="2" file="sample1.html" ftype="html" />
    </test>
  </tests>
  
  <help>

**What it does**

Intersect SNPs and generate an output report from a CSV file of knowned SNPs (workflow generated/annotated)

              "/tmp/vcf_snps_utils_output/"
  --help      Show this message and exit.

  vcf_snps_utils intersect example.vcf example.csv --out output/test

  </help>

</tool>