Mercurial > repos > sanbi-uwc > trimmomatic

view install_tool_deps.sh @ 3:f6cb99d6afd3 draft

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planemo upload for repository https://github.com/SANBI-SA/galaxy-tools/tree/master/tools/trimmomatic commit 213668d2e5a61c806ad992c201ae6e304c6e0965-dirty
author sanbi-uwc
date Mon, 23 Jan 2017 06:31:29 -0500
parents d8975856862e
children
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#!/bin/bash
#
# Install dependencies for Trimmomatic for testing from the command line
#
# Installer functions
. $(dirname $0)/../../local_dependency_installers/trimmomatic.sh
# Installation directory
TOP_DIR=$1
if [ -z "$TOP_DIR" ] ; then
    echo Usage: $(basename $0) DIR
    exit
fi
if [ -z "$(echo $TOP_DIR | grep ^/)" ] ; then
    TOP_DIR=$(pwd)/$TOP_DIR
fi
if [ ! -d "$TOP_DIR" ] ; then
    mkdir -p $TOP_DIR
fi
# Trimmomatic 0.32
install_trimmomatic_0_36 $TOP_DIR
##
#