Mercurial > repos > sanbi-uwc > trimmomatic

diff tool_dependencies.xml @ 4:642a39a927c9 draft

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planemo upload for repository https://github.com/SANBI-SA/galaxy-tools/tree/master/tools/trimmomatic commit b30cac62484ba664a19a02a6817752f4f2b140bf
author sanbi-uwc
date Mon, 23 Jan 2017 07:46:47 -0500
parents d8975856862e
children
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--- a/tool_dependencies.xml	Mon Jan 23 06:31:29 2017 -0500
+++ b/tool_dependencies.xml	Mon Jan 23 07:46:47 2017 -0500
@@ -4,7 +4,7 @@
       <install version="1.0">
 	<actions>
 	  <action type="download_by_url">http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip</action>
-	  <action type="move_file">
+	  <action type="move_file" rename_to="trimmomatic.jar">
 	    <source>trimmomatic-0.36.jar</source>
 	    <destination>$INSTALL_DIR</destination>
 	  </action>
@@ -13,10 +13,10 @@
             <destination_directory>$INSTALL_DIR/adapters</destination_directory>
           </action>
 	  <action type="set_environment">
-	    <environment_variable name="TRIMMOMATIC_DIR" action="set_to">$INSTALL_DIR</environment_variable>
+	    <environment_variable name="TRIMMOMATIC_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
 	  </action>
 	  <action type="set_environment">
-	    <environment_variable name="TRIMMOMATIC_ADAPTERS_DIR" action="set_to">$INSTALL_DIR/adapters</environment_variable>
+	    <environment_variable name="TRIMMOMATIC_ADAPTERS_PATH" action="set_to">$INSTALL_DIR/adapters</environment_variable>
 	  </action>
 	</actions>
       </install>