Mercurial > repos > sanbi-uwc > summarize_poliovirus_alignment

diff summarize_poliovirus_alignment.xml @ 5:7bcfc97b9284 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/pvanheus/polio_report commit 753aad311378b064f2152c8e99e7c8097c7f4321-dirty
author sanbi-uwc
date Fri, 11 Nov 2022 06:19:00 +0000
parents eae57366bc55
children
line wrap: on
line diff
--- a/summarize_poliovirus_alignment.xml	Fri Jul 22 10:01:30 2022 +0000
+++ b/summarize_poliovirus_alignment.xml	Fri Nov 11 06:19:00 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="summarize_poliovirus_alignment" name="Summarize poliovirus alignment" version="0.2.0+galaxy1" profile="21.05">
+<tool id="summarize_poliovirus_alignment" name="Summarize poliovirus alignment" version="0.3.0+galaxy1" profile="21.05">
     <requirements>
         <requirement type="package" version="3.9">python</requirement>
     </requirements>
@@ -22,7 +22,7 @@
     <outputs>
         <data name="output1" format="tabular" label="Poliovirus variant summary on ${on_string}">
             <actions>
-                <action name="column_names" type="metadata" default="sample name,best matching reference,num variants,perc variants,quality,variant list" />
+                <action name="column_names" type="metadata" default="sample name,best matching reference,num variants,perc variants,quality,vp1 coverage,variant list" />
             </actions>
         </data>
         <collection name="variant_list" type="list" label="Poliovirus variant lists on ${on_string}" structured_like="alignment_assessments" format="tabular">