Mercurial > repos > sanbi-uwc > summarize_poliovirus_alignment

diff summarize_alignment.py @ 5:7bcfc97b9284 draft default tip

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planemo upload for repository https://github.com/pvanheus/polio_report commit 753aad311378b064f2152c8e99e7c8097c7f4321-dirty
author sanbi-uwc
date Fri, 11 Nov 2022 06:19:00 +0000
parents 5c8dfc4d9d68
children
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--- a/summarize_alignment.py	Fri Jul 22 10:01:30 2022 +0000
+++ b/summarize_alignment.py	Fri Nov 11 06:19:00 2022 +0000
@@ -30,6 +30,7 @@
             alignment_summary["mismatches"],
             alignment_summary["perc_mismatches"],
             round(alignment_summary["quality"], 2),
+            alignment_summary["vp1_coverage_perc"],
             mismatch_list,
             sep="\t",
             file=summary_output,