Mercurial > repos > sanbi-uwc > summarize_poliovirus_alignment
comparison summarize_poliovirus_alignment.xml @ 4:eae57366bc55 draft
planemo upload for repository https://github.com/pvanheus/polio_report commit a99e10fec2fac5aae70974c977eb3b362a1a8429-dirty
| author | sanbi-uwc |
|---|---|
| date | Fri, 22 Jul 2022 10:01:30 +0000 |
| parents | 09b98e40ab59 |
| children | 7bcfc97b9284 |
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| 3:09b98e40ab59 | 4:eae57366bc55 |
|---|---|
| 1 <tool id="summarize_poliovirus_alignment" name="Summarize poliovirus alignment" version="0.2.0+galaxy0" profile="21.05"> | 1 <tool id="summarize_poliovirus_alignment" name="Summarize poliovirus alignment" version="0.2.0+galaxy1" profile="21.05"> |
| 2 <requirements> | 2 <requirements> |
| 3 <requirement type="package" version="3.9">python</requirement> | 3 <requirement type="package" version="3.9">python</requirement> |
| 4 </requirements> | 4 </requirements> |
| 5 <command detect_errors="exit_code"><![CDATA[ | 5 <command detect_errors="exit_code"><![CDATA[ |
| 6 python $__tool_directory__/summarize_alignment.py | 6 python $__tool_directory__/summarize_alignment.py |
| 70 2. variant position in VP1 (in 1-based coordinates) | 70 2. variant position in VP1 (in 1-based coordinates) |
| 71 | 71 |
| 72 3. base in reference | 72 3. base in reference |
| 73 | 73 |
| 74 4. base in sequenced sample | 74 4. base in sequenced sample |
| 75 | 75 |
| 76 ]]></help> | 76 ]]></help> |
| 77 <citations> | 77 <citations> |
| 78 <citation type="bibtex"><![CDATA[ | 78 <citation type="bibtex"><![CDATA[ |
| 79 @software{van_Heusden_Poliovirus_variation_reporting_2022, | 79 @software{van_Heusden_Poliovirus_variation_reporting_2022, |
| 80 author = {van Heusden, Peter}, | 80 author = {van Heusden, Peter}, |