Mercurial > repos > sanbi-uwc > shapeit_phase

changeset 21:394bd82a4c40 draft default tip

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planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry commit 98e23aec0945a9922ab30e6ca15ab08800a2abb7-dirty
author sanbi-uwc
date Tue, 18 Sep 2018 13:38:48 -0400
parents a5ef4f2c8124
children
files shapeit_phase.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/shapeit_phase.xml	Tue Sep 18 11:57:49 2018 -0400
+++ b/shapeit_phase.xml	Tue Sep 18 13:38:48 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="shapeit_phase" name="shapeit_phase" version="0.19.0">
+<tool id="shapeit_phase" name="shapeit_phase" version="0.20.0">
     <description>genomic data with or without reference panel</description>
     <requirements>
         <requirement type="package" version="2.r837">shapeit</requirement>
@@ -60,12 +60,13 @@
         #end if
 
         shapeit
-        --thread \${GALAXY_SLOTS:-1}
 
         #if $check_mode != "":
           -check
         #end if
 
+        --thread \${GALAXY_SLOTS:-1}
+
         #if $input_files.input_type_select == "vcf":
           --input-vcf ${input_files.vcf_file}
         #else if $input_files.input_type_select == "plink_ped_map":