Mercurial > repos > sanbi-uwc > repeatmasker

annotate test-data/small.fasta.stats @ 0:589811e6b4db draft default tip

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planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
author sanbi-uwc
date Sun, 22 Apr 2018 02:00:59 -0400
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589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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1 ==================================================
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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2 file name: dataset_12.dat
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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3 sequences: 1
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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4 total length: 14220 bp (14220 bp excl N/X-runs)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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5 GC level: 39.94 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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6 bases masked: 378 bp ( 2.66 %)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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7 ==================================================
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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8 number of length percentage
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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9 elements* occupied of sequence
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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10 --------------------------------------------------
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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11 SINEs: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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12 ALUs 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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13 MIRs 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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14
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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15 LINEs: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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16 LINE1 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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17 LINE2 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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18 L3/CR1 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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19
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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20 LTR elements: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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21 ERVL 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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22 ERVL-MaLRs 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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23 ERV_classI 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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24 ERV_classII 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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25
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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26 DNA elements: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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27 hAT-Charlie 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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28 TcMar-Tigger 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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30 Unclassified: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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32 Total interspersed repeats: 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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35 Small RNA: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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37 Satellites: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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38 Simple repeats: 8 378 bp 2.66 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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39 Low complexity: 0 0 bp 0.00 %
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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40 ==================================================
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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42 * most repeats fragmented by insertions or deletions
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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43 have been counted as one element
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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46 The query species was assumed to be homo
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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47 RepeatMasker Combined Database: Dfam_Consensus-20170127
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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49 run with rmblastn version 2.2.27+
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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50 The query was compared to unclassified sequences in ".../dataset_2.dat"
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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51