Mercurial > repos > sanbi-uwc > repeatmasker

annotate test-data/small.fasta.align @ 0:589811e6b4db draft default tip

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planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
author sanbi-uwc
date Sun, 22 Apr 2018 02:00:59 -0400
parents
children
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0
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
1 18 0.00 0.00 0.00 scaffold_1 613 632 (13519) (GT)n#Simple_repeat 1 20 (0) m_b1s252i0 1
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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2
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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3 scaffold_1 613 GTGTGTGTGTGTGTGTGTGT 632
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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4
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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5 (GT)n#Simple_ 1 GTGTGTGTGTGTGTGTGTGT 20
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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6
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
7 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
8 Transitions / transversions = 1.00 (0/0)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
9 Gap_init rate = 0.00 (0 / 19), avg. gap size = 0.0 (0 / 0)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
10
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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11
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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12 16 18.30 2.22 2.22 scaffold_1 780 824 (13327) (ATAATA)n#Simple_repeat 1 45 (0) m_b1s252i1 2
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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13
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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14 scaffold_1 780 ATATTAAT-ATACTAAATAATGATAATATTAATTCTAATAATGATA 824
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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15 v - v - i v vv i
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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16 (ATAATA)n#Sim 1 ATAATAATAATAAT-AATAATAATAATAATAATAATAATAATAATA 45
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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17
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
18 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
19 Transitions / transversions = 0.40 (2/5)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
20 Gap_init rate = 0.05 (2 / 44), avg. gap size = 1.00 (2 / 2)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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21
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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22
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
23 12 23.88 4.55 0.00 scaffold_1 2231 2274 (11877) (CAGA)n#Simple_repeat 1 46 (0) m_b1s252i2 3
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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24
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
25 scaffold_1 2231 CAGA-AAACAGTCAGCCAATCAGA-GGACAGACTCAGAGACAGACA 2274
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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26 - i v v iv -i vv v
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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27 (CAGA)n#Simpl 1 CAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACA 46
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
28
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
29 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
30 Transitions / transversions = 0.50 (3/6)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
31 Gap_init rate = 0.05 (2 / 43), avg. gap size = 1.00 (2 / 2)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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32
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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33
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
34 15 18.42 10.20 0.00 scaffold_1 4853 4901 (9250) (TC)n#Simple_repeat 1 54 (0) m_b1s252i3 4
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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35
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
36 scaffold_1 4853 TCTATTTTTCTCTCTCTCTCT-TCGGTCAGTTTCTCT-TCT-TCTC-CTC 4898
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
37 v i i - vv vv i - - -
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
38 (TC)n#Simple_ 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 50
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
39
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
40 scaffold_1 4899 -CTC 4901
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
41 -
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
42 (TC)n#Simple_ 51 TCTC 54
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
43
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
44 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
45 Transitions / transversions = 0.60 (3/5)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
46 Gap_init rate = 0.10 (5 / 48), avg. gap size = 1.00 (5 / 5)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
47
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
48
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
49 13 19.07 1.82 7.69 scaffold_1 6230 6284 (7867) (TAATTAA)n#Simple_repeat 1 52 (0) m_b1s252i4 5
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
50
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
51 scaffold_1 6230 TAATGAGT-ATTACTAATTAATAATTGGATGAGTTTATGAATTCATCATT 6278
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
52 v i - v -i - i v - v v
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
53 (TAATTAA)n#Si 1 TAATTAATAATTAATAATTAATAATT-AAT-AATTAAT-AATTAATAATT 47
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
54
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
55 scaffold_1 6279 AAATAA 6284
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
56 -
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
57 (TAATTAA)n#Si 48 -AATAA 52
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
58
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
59 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
60 Transitions / transversions = 0.60 (3/5)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
61 Gap_init rate = 0.09 (5 / 54), avg. gap size = 1.00 (5 / 5)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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62
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sanbi-uwc
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63
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sanbi-uwc
parents:
diff changeset
64 15 28.31 0.00 3.51 scaffold_1 6548 6606 (7545) (GACA)n#Simple_repeat 1 57 (0) m_b1s252i5 6
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
65
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
66 scaffold_1 6548 GACAGAGAGATAAACAGACAGACATGGAAACAGAGGGACATAGAAAACAA 6597
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
67 v i i viv i vi v -v i -
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
68 (GACA)n#Simpl 1 GACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGA-CAGAC-A 48
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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69
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
70 scaffold_1 6598 GACAGAGAG 6606
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
71 v
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
72 (GACA)n#Simpl 49 GACAGACAG 57
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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73
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
74 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
75 Transitions / transversions = 0.86 (6/7)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
76 Gap_init rate = 0.03 (2 / 58), avg. gap size = 1.00 (2 / 2)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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77
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589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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diff changeset
79 67 2.94 1.43 0.00 scaffold_1 11981 12050 (2170) (CT)n#Simple_repeat 1 71 (0) c_b1s251i0 7
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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sanbi-uwc
parents:
diff changeset
81 scaffold_1 11981 CTCTCTCTCTCTCCCTCTCCCTCTC-CTCTCTCTCTCTCTCTCTCTCTCT 12029
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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82 i i -
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
83 (CT)n#Simple_ 1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 50
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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84
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
85 scaffold_1 12030 CTCTCTCTCTCTCTCTCTCTC 12050
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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86
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sanbi-uwc
parents:
diff changeset
87 (CT)n#Simple_ 51 CTCTCTCTCTCTCTCTCTCTC 71
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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88
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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parents:
diff changeset
89 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
90 Transitions / transversions = 1.00 (2/0)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
91 Gap_init rate = 0.01 (1 / 69), avg. gap size = 1.00 (1 / 1)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
92
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
93
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
94 19 15.37 2.78 0.00 scaffold_1 12078 12113 (2107) (CT)n#Simple_repeat 1 37 (0) m_b1s252i6 8
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
95
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
96 scaffold_1 12078 CTCGCTCTCTCACTCTCTCCCTCTCTC-CCCACTCTC 12113
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
97 v v i - i v
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
98 (CT)n#Simple_ 1 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC 37
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
99
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
100 Matrix = Unknown
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
101 Transitions / transversions = 0.67 (2/3)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
102 Gap_init rate = 0.03 (1 / 35), avg. gap size = 1.00 (1 / 1)
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
103
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
parents:
diff changeset
104