Mercurial > repos > sanbi-uwc > repeatmasker

annotate test-data/repeats.fasta @ 0:589811e6b4db draft default tip

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planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
author sanbi-uwc
date Sun, 22 Apr 2018 02:00:59 -0400
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0
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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1 >Asian_seabass_ONSAT_SB_Concensus_Lenght_170_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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2 CGAAAAATTTAATAATTTAGGGGTCTTGAGCATGGGCGTGGTAAAATGCCCTCGGTAGCG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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3 CCACCTACATTTTTAAACGGAACAGCCCCTCAAGCCCGTTGCGCCTAAAAATCTGAAAAT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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4 CTGCACACATATGTAACATCCCATGACGCACCAAAAAGTCTCTTGGAGCCA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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5 >Asian_seabass_MOSAT_SB_T_34a_satellite_DNA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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6 TTTGTGACATCACTACATAGTTTGTTGAAAACGTAC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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7 >Asian_seabass_MOSAT_SB_T_34b_satellite_DNA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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8 TTTGTGACATCACACATAGTTGTGGGTCAGTAC 
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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9 >Sat_38
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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10 AAAAAATGTCATAGTATAGTATGGCGTCAAAAAACATG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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11 >Asian_seabass_Sat_217_Consensus_Length_217_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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12 AGTAAACAAGCATTATGGTTGAAACCATAATTTCCTGTCGGGAGAGCCTTTCCCTCTTTT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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13 GTGCACTGTATGCAATCCCAGAGTGTGAATAAGCGCTTTTCCAGCGTTTTGAGGCTTATT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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14 CAGCTCAGAATGGCTTAATACTGCACTATCTGACCAGGACAAAGACAAACTAAGAACTCA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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15 GCCACACGGACATGAAAGTTGTTTTACTTACAATATT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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16 >Asian_seabass_Sat_217_Consensus_Length_427_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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17 CCAGCGTTTTGAGGCTTATTCAGCTCAGAATGGCTTAATACTGCACTATCTGACCAGGAC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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18 AAGACAAACTAAGAACTCAACACACTGACATGAAAGTTTCTATATTTCTATTAAAATAAA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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19 CAAACATTATGGTTGAAACCATAATTTCATTTCGGGAGAGCCTTTCCCTCTTTGTGGCAC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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20 TGTATGTAATCTGAAGTGTGAATAACGCTTTTCCCGCGTTTGAGGCTTATTCAGCTCAGA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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21 ATGGCTTAATACTGCACTATCTGACCAGGACAAGACAAACTAAGAACTCAGCCACACGGA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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22 CATGAAAGTTGTTTACTTTACAATATTAGTAAACAAGCATTATGGTTGAAACCATAATTT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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23 CCTGTCGGGAAGAGCTTCCCTCTTTTTGTGCACTGTATGCAATCCCAGAGTGTGAATAAG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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24 CGCTTTT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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25 >Asian_seabass_Sat_LM_Consensus_Length_453_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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26 CCCAACAAAATAGCACTTACTGCTTTCCAAATTCAAGTCTGTGCCTGTGTTAGGGTAATG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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27 TTGGTGATAAATTGATGTACTTAGCTTATCCTGTGAAAATGGTGTAAAATGGCAGTCTCC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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28 ATGTTTGTTGAAGAAACTCACAACCAAGACAACCCCAAAGAGAAGCACTTATGAAGACAG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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29 AAATCATGAGTGGCTCTTATTGAAGTGATCAGAGTTGGACTCCATTAAGAAAATGGCTTT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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30 CAATGTAGTCAGTTGCTTTGTCACTTAAAACTGCCCCAACAAGTAGCACTTACTGCAATT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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31 TGGTAGTCAAAGTCAATGCTCAAGTTAAGGGTAATAGTAGTGACATAATAGAAAAATCTC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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32 TAAATATATTTGCTGGCAGCTTTAATATACAGAATGAGTGCCATGATGAATTCTTGATAC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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33 AGAACAGGGACTTCCAAAATCAGCCAACACTAA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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34 >Asian_seabass_Sat_LM_Consensus_Length_218_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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35 CCCAACAAAATAGCACTTACTGCTTTCCAAATTCAAGTCTGTGCCTGTGTTAGGGTAATG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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36 TTGGTGATAAATTGATGTACTTAGCTTATCCTGTGAAAATGGTGTAAAATGGCAGTCTCC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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37 TGTTTGTTGAAGAAACTCACAACCAAGACAACCCCAAAGAGAAGCACTTATGAAGACAGA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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38 AATCATGAGTGGCTCTTATTGAAGTGATCAGAGTTGG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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39 >Asian_seabass_Sat_LM Consensus_Length_150_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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40 CTCACAACCAAGACAACCCCAAAGAGAAGCACTTATGAAGACAGAAATCATGAGTGGCTC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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41 TTATTGAAGTGATCAGAGTTGGACTCCATTAAGAAAATGGCTTTCAATGTAGTCAGTTGC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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42 TTTGTCACTTAAAACTGCCCCAACAAGTAGCA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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43 >Asian_seabass_Sat_Unk_Consensus_Length_341_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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44 GTTTGGGTAAAAATATTGTCTATTTACGAGCTATCCTCTATATATTTTTGATCTGATTAA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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45 TAAATACCTCTAGCCCACAAACTGTGGTATTTTGCTATGTGGCAGTTCACCCGAAAGTCC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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46 AGTAGCATTTATCGCATTTTCTAAAGATAGTCAGTGCCTGAAAGTTTGAGGCAGATAAAC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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47 AAATTGTTCAAGTAAGAACTATATCTTTCTTATGATTTTACCGCAATCATACAGGTTGTT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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48 TCTTGTGGTCTGCTGGGCATTGTATCCCTTTGTTGTATGGATTTTTCCTTTCTTTAATGA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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49 TCTCCTCCCTGGAGTTTGTAATCCCTGTTTGTAGTGGAATT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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50 >Asian_seabass_Sat_Unk_Consensus_Length_789_bp
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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51 CAAAAAAATGGAAAAAAAAAAAGTGGCTCATTTGAAGTGAATCAGAGTTGGGTAACATTG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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52 TCCTTAATTACAGCTATGCTTATATACTTGATCTGATAATAATACTCTAGCCACAATCTG
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sanbi-uwc
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53 TGGGTATTCTGCTATTTGCAGTCCACCCAAAGTCATAGCATTTAATCCATTCTAGGAAGA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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54 TACGTCAGTGCTGAGTTGAGCCAATAACACCAAATTGTCATAAGAACTATTATTTTCTTT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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55 ATGATTTTTACGCATCAGTACAGGTGTTTTCTTGTGGTTTCTGCTGCATGTATCCCTGTT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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56 GTAAGTGGATTCTCCTTTGCTTATGATCTCCTCCGCTGCGTTGTATCCTGTTTGTAGTGG
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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57 ATTTCCTTGCACTGATTCTGCCCGCTCTTAATACTGAATGAACGCCCTCCCACCAGTAGT
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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58 ACTGCCACCTTTGTTTTTTCACAAAGTGTTCAATGGCCTTGATAATGACTTGGTAACTAC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
sanbi-uwc
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59 ATCACCACTTTTTTGTACGTAATCAACAGACAATCACCCATTAAATTCATGCGGCCATTA
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60 GGCAGCTTGATGAGCTGGACATTTGACCTCCCCAATGAATCTTTGCTGATGGGAAACTTA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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61 TTGCCACCATAAAGTGAACCAGCATTGCTATGTCCATGCTGTAATTTGAAAACCCAATAC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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62 AAAGAAGCCCTGCATATATACCTCCCAAATTGGCTTCTGAGACCCGGGCGTAATCACTGC
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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63 ATGGCCATAGATAAACATTGAAATCTTCTGTTGCAGTCAGTTTGCTTTTTGTCAACTTTA
589811e6b4db planemo upload for repository https://github.com/sanbi-sa/tools-sanbi-uwc commit da14cd54b0606513434a6e5bf2ed2881ab2220ec-dirty
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64 AAAACTGCC