Mercurial > repos > sanbi-uwc > qualimap2

diff qualimap_bamqc.xml @ 4:a19abfa30ca7 draft

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planemo upload for repository https://github.com/zipho/qualimap2 commit a84c585723c4499569d24c6cdaa7192113013159
author sanbi-uwc
date Tue, 05 Apr 2016 03:34:34 -0400
parents b00361fe3c52
children 8dff744880cd
line wrap: on
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--- a/qualimap_bamqc.xml	Mon Apr 04 04:31:02 2016 -0400
+++ b/qualimap_bamqc.xml	Tue Apr 05 03:34:34 2016 -0400
@@ -13,7 +13,6 @@
             --input_file ${input_realigned_bam_file}
             --out_genome_file ${genomecov_file}
             --out_dir ${genomecov_file.files_path}
-            --out_pdf_file ${pdf_file}
             --java_mem_size ${mem_size}
     </command>
     <inputs>
@@ -22,7 +21,6 @@
     </inputs>
     <outputs>
         <data format="genomecov" name="genomecov_file" label="QualiMap: BamQC GenomeCov output"/>
-        <data format="pdf" name="pdf_file" label="QualiMap: BamQC PDF output"/>
     </outputs>
     <help>Help!</help>
     <citations>