comparison qualimap_bamqc.xml @ 2:dcd6ab7a3d8f draft

planemo upload for repository https://github.com/zipho/qualimap2 commit 3835f1d76babcb2cce9b241fa77aeadad871e844

1:80b0209b0727

            --out_pdf_file ${pdf_file}
            --java-mem-size ${mem_size}
    </command>
    <inputs>
        <param name="input_realigned_bam_file" type="data" format="bam" label="Realigned BAM dataset" help="Specify realigned BAM dataset"/>
        <param name="mem_size" type="data" format="txt" label="Java memory size (default Gig)" help="Specify the size of memory to allocate to the Job with default 8 Gig"/>
    </inputs>
    <outputs>
        <data format="genomecov" name="genomecov_file" label="QualiMap: BamQC GenomeCov output"/>
        <data format="pdf" name="pdf_file" label="QualiMap: BamQC PDF output"/>
    </outputs>

2:dcd6ab7a3d8f

            --out_pdf_file ${pdf_file}
            --java-mem-size ${mem_size}
    </command>
    <inputs>
        <param name="input_realigned_bam_file" type="data" format="bam" label="Realigned BAM dataset" help="Specify realigned BAM dataset"/>
        <param name="mem_size" type="text" value="8G" format="txt" label="Java memory size (default Gig)" help="Specify the size of memory to allocate. (Default 8 Gig)"/>
    </inputs>
    <outputs>
        <data format="genomecov" name="genomecov_file" label="QualiMap: BamQC GenomeCov output"/>
        <data format="pdf" name="pdf_file" label="QualiMap: BamQC PDF output"/>
    </outputs>