Mercurial > repos > sanbi-uwc > qc
comparison qc.py @ 7:6bdec8c62aec draft default tip
"planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/qc commit 58ea5206cf78a4ff48fadedbe4e260c190d6f06e"
| author | sanbi-uwc |
|---|---|
| date | Mon, 12 Apr 2021 15:53:58 +0000 |
| parents | 878f18249f76 |
| children |
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| 6:878f18249f76 | 7:6bdec8c62aec |
|---|---|
| 158 writer.writeheader() | 158 writer.writeheader() |
| 159 writer.writerow(qc_line) | 159 writer.writerow(qc_line) |
| 160 | 160 |
| 161 # write a json file from the dict | 161 # write a json file from the dict |
| 162 json_file = args.outfile + '.json' | 162 json_file = args.outfile + '.json' |
| 163 with open(args.outfile, 'w') as jsonfile: | 163 with open(json_file, 'w') as jsonfile: |
| 164 json.dump(qc_line, json_file) | 164 json.dump(qc_line, jsonfile) |
| 165 | 165 |
| 166 N_density = sliding_window_N_density(fasta) | 166 N_density = sliding_window_N_density(fasta) |
| 167 make_qc_plot(depth_pos, N_density, args.sample) | 167 make_qc_plot(depth_pos, N_density, args.sample) |
| 168 | 168 |
| 169 def main(): | 169 def main(): |