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planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit 5bc9005790b78aabb615f559f31ee71c714c7072
author sanbi-uwc
date Wed, 12 Sep 2018 05:23:00 -0400
parents 0a66d41464b4
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0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
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1 Plink
0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
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2 ==============
0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
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0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
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4 LINK is a free, open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.
0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
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5 The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data).
0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
parents:
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6 Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.
0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
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0a66d41464b4 planemo upload for repository https://github.com/CPGRZA/cpgr_ancestry/galaxy-tools/plink commit d75648a99156867f43b45dc4cdb6fdb12bfc5de4
sanbi-uwc
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8 PLINK (one syllable) is being developed by Shaun Purcell whilst at the Center for Human Genetic Research (CHGR), Massachusetts General Hospital (MGH), and the Broad Institute of Harvard & MIT, with the support of others.