Mercurial > repos > sanbi-uwc > output_test_tool
changeset 0:44a961461b85 draft default tip
planemo upload
| author | sanbi-uwc |
|---|---|
| date | Tue, 30 Aug 2022 12:50:52 +0000 |
| parents | |
| children | |
| files | output_test_tool.xml |
| diffstat | 1 files changed, 28 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/output_test_tool.xml Tue Aug 30 12:50:52 2022 +0000 @@ -0,0 +1,28 @@ +<tool id="output_test_tool" name="Output Test Tool" version="0.1.0+galaxy0" python_template_version="3.5" profile="21.05"> + <requirements> + </requirements> + <command detect_errors="exit_code"><![CDATA[ + #if $write_stderr + echo "This output goes to stderr" >&2 ; + #end if + #if $write_stdout + echo "This output goes to stdout" ; + #end if + echo "This output is just a placeholder and of no signficance." >'$output1' ; + #if $fail_job + exit 1 + #end if + ]]></command> + <inputs> + <param name="write_stdout" type="boolean" checked="true" label="Write to stdout" /> + <param name="write_stderr" type="boolean" checked="true" label="Write to stderr" /> + <param name="fail_job" type="boolean" checked="false" label="Fail job" help="Exit with exit code 1, i.e. fail job" /> + </inputs> + <outputs> + <data name="output1" format="txt" label="Output dataset from Output Test Tool" /> + </outputs> + <help><![CDATA[ + This tool simply writes a dataset and can produce output to stdout, stderr or produce a job failure. It exists + to test these features in Galaxy. + ]]></help> +</tool> \ No newline at end of file