Mercurial > repos > sanbi-uwc > novo_sort

diff novo_sort.py @ 3:9c51aca51902 draft

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planemo upload for repository https://github.com/zipho/novo_sort commit c490d694fa0be39bcd5048981cf4f08cd0821a50
author sanbi-uwc
date Fri, 01 Apr 2016 09:53:18 -0400
parents 9b131be2b326
children 146641fe5ff6
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--- a/novo_sort.py	Thu Mar 31 09:58:51 2016 -0400
+++ b/novo_sort.py	Fri Apr 01 09:53:18 2016 -0400
@@ -24,6 +24,7 @@
 
 def main():
     parser = argparse.ArgumentParser(description="Re-sorting aligned files by read position")
+    parser.add_argument('output_filename')
     parser.add_argument('--bam_filename')
     args = parser.parse_args()