# HG changeset patch
# User sanbi-uwc
# Date 1525258324 14400
# Node ID 6b5b34b321a560e8219ab8f2db5dcb0b4bc19000
# Parent  80e0ad163783dca2bc49097b3dccb4337427fd6a
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/novo_align commit ab3d061d6efdd16d0236746f6c643c5e5063d262

diff -r 80e0ad163783 -r 6b5b34b321a5 novo_align.xml
--- a/novo_align.xml	Thu Jan 25 08:18:37 2018 -0500
+++ b/novo_align.xml	Wed May 02 06:52:04 2018 -0400
@@ -77,7 +77,7 @@
     <conditional name="paired_end">
     <param name="is_paired_end" type="boolean" label="Paired end data?" truevalue="yes" falsevalue="no" checked="yes" />
     <when value="no">
-      <param name="fastq_in" type="data" format="fastqsanger|fastqsanger.gz" label="Input FASTQ file" />
+      <param name="fastq_in" type="data" format="fastqsanger,fastqsanger.gz" label="Input FASTQ file" />
     </when>
     <when value="yes">
       <conditional name="paired_input_type_conditional">
@@ -86,11 +86,11 @@
           <option value="collection">Dataset collection pair</option>
         </param>
         <when value="pair_of_files">
-      <param name="fastq_r1_in" type="data" format="fastqsanger|fastqsanger.gz" label="Input FASTQ file (R1/first of pair)" />
-      <param name="fastq_r2_in" type="data" format="fastqsanger|fastqsanger.gz" label="Input FASTQ file (R2/second of pair)" />
+      <param name="fastq_r1_in" type="data" format="fastqsanger,fastqsanger.gz" label="Input FASTQ file (R1/first of pair)" />
+      <param name="fastq_r2_in" type="data" format="fastqsanger,fastqsanger.gz" label="Input FASTQ file (R2/second of pair)" />
     </when>
         <when value="collection">
-          <param name="fastq_pair" format="fastqsanger|fastqsanger.gz" type="data_collection"
+          <param name="fastq_pair" format="fastqsanger,fastqsanger.gz" type="data_collection"
          collection_type="paired"
          label="Select FASTQ dataset collection with R1/R2 pair" />
         </when>