Mercurial > repos > sanbi-uwc > novo_align

diff novo_align.py @ 33:fc134b9ac951 draft

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planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/novo_align commit a5e4ca4a66eb4e315ca564238e27e03936eea6fa
author sanbi-uwc
date Thu, 31 May 2018 04:46:32 -0400
parents c6e99afd59a8
children
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--- a/novo_align.py	Thu May 31 03:45:15 2018 -0400
+++ b/novo_align.py	Thu May 31 04:46:32 2018 -0400
@@ -34,7 +34,7 @@
 def main():
     parser = argparse.ArgumentParser(description="Generate a BAM file from the Novo Align tool")
     parser.add_argument('out_file')
-    parser.add_argument('out_stats')    
+    parser.add_argument('--out_stats')    
     parser.add_argument('--index_filename')
     parser.add_argument('--forward_filename')
     parser.add_argument('--reverse_filename')