Mercurial > repos > sanbi-uwc > novo_align

diff novo_align.py @ 15:8553432eb6d8 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/zipho/novo_align commit 4db125fcd73327813d7bd511852bbe9ffc68a25c
author sanbi-uwc
date Mon, 09 Jan 2017 08:19:00 -0500
parents bfe39c503a40
children 94ae1dd64bca
line wrap: on
line diff
--- a/novo_align.py	Thu Dec 15 07:59:13 2016 -0500
+++ b/novo_align.py	Mon Jan 09 08:19:00 2017 -0500
@@ -39,8 +39,9 @@
     args = parser.parse_args()
 
     # a dirty way of referencing the file
-    index_file_path = args.index_filename + "/" + args.index_filename.split("/")[-1]
+    index_file_path = args.index_filename # not sure of the logic here: + "/" + args.index_filename.split("/")[-1]
     novo_align(args.output_filename, index_file_path, args.forward_filename, args.reverse_filename)
 
+
 if __name__ == "__main__":
     main()