# HG changeset patch
# User sanbi-uwc
# Date 1463579024 14400
# Node ID ec3016ba76f277b4a80ecb0527b2a2567b28e921
# Parent 4ab571f8a7698c1840eb8238cc57b8b363cba988
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/datatypes/neo4j_datatypes commit 002030d20f30ca916e883b64e332dcbdfa0d10a0
diff -r 4ab571f8a769 -r ec3016ba76f2 neo4j.py
--- a/neo4j.py Wed May 18 09:37:09 2016 -0400
+++ b/neo4j.py Wed May 18 09:43:44 2016 -0400
@@ -7,18 +7,19 @@
from galaxy.datatypes.images import Html
from galaxy.datatypes.data import Data, Text
-from galaxy.datatypes.metadata import MetadataElement
+#from galaxy.datatypes.metadata import MetadataElement
gal_Log = logging.getLogger(__name__)
verbose = True
-class Neo4j(object):
+class Neo4j(Html):
"""
base class to use for neostore datatypes
derived from html - composite datatype elements
stored in extra files path
"""
+ """
MetadataElement( name='neostore', default=None, desc='Neo4j NeoStore File', readonly=True, visible=True, set_in_upload=True, no_value=None )
MetadataElement( name='neostore_count_file', default=None, desc='Neo4j Count File', readonly=True, visible=True, set_in_upload=True, no_value=None )
MetadataElement( name="neostore_labeltokenstore_db_file", default=None, desc="Neostore LabelTokenStore File", readonly=True, visible=True, no_value=None )
@@ -50,9 +51,9 @@
return "\n".join( rval )
def regenerate_primary_file(self, dataset):
- """
+
cannot do this until we are setting metadata
- """
+
efp = dataset.extra_files_path
flist = os.listdir(efp)
rval = ['Files for Composite Dataset %sComposite %s contains:' % (dataset.name, dataset.name)]
@@ -65,7 +66,7 @@
f.write("\n".join( rval ))
f.write('\n')
f.close()
-
+ """
def get_mime(self):
"""Returns the mime type of the datatype"""
@@ -115,6 +116,9 @@
class Neo4jDB(Neo4j, Data):
"""Class for neo4jDB database files."""
file_ext = 'neostore'
+ composite_type = 'basic'
+ allow_datatype_change = False
+
def __init__(self, **kwd):
Data.__init__(self, **kwd)