Mercurial > repos > sanbi-uwc > neo4j_datatypes
comparison neo4j.py @ 5:7f262236d352 draft
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/datatypes/neo4j_datatypes commit ebd884bad7609048e02d1ef04985cf812ab142a3
| author | sanbi-uwc |
|---|---|
| date | Wed, 18 May 2016 06:38:16 -0400 |
| parents | 4b1d16644ec2 |
| children | 643e3ebaa907 |
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| 4:4b1d16644ec2 | 5:7f262236d352 |
|---|---|
| 1 """ | 1 """ |
| 2 Neo4j Composite Dataset | 2 Neo4j Composite Dataset |
| 3 """ | 3 """ |
| 4 import logging | 4 import logging |
| 5 import os | |
| 6 import sys | 5 import sys |
| 7 | 6 |
| 8 from galaxy.datatypes.images import Html | |
| 9 from galaxy.datatypes.metadata import MetadataElement | |
| 10 from galaxy.datatypes.data import get_file_peek | |
| 11 from galaxy.datatypes.data import Data, Text | 7 from galaxy.datatypes.data import Data, Text |
| 12 | 8 |
| 13 gal_Log = logging.getLogger(__name__) | 9 gal_Log = logging.getLogger(__name__) |
| 14 verbose = True | 10 verbose = True |
| 11 | |
| 15 | 12 |
| 16 class Neo4j(object): | 13 class Neo4j(object): |
| 17 """ | 14 """ |
| 18 base class to use for neostore datatypes | 15 base class to use for neostore datatypes |
| 19 derived from html - composite datatype elements | 16 derived from html - composite datatype elements |
| 20 stored in extra files path | 17 stored in extra files path |
| 21 """ | 18 """ |
| 19 file_ext = 'neo4j' | |
| 20 | |
| 22 def get_mime(self): | 21 def get_mime(self): |
| 23 """Returns the mime type of the datatype""" | 22 """Returns the mime type of the datatype""" |
| 24 return 'text/html' | 23 return 'text/html' |
| 25 | 24 |
| 26 def set_peek(self, dataset, is_multi_byte=False): | 25 def set_peek(self, dataset, is_multi_byte=False): |
| 88 self.add_composite_file('neostore.propertystore.db', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 87 self.add_composite_file('neostore.propertystore.db', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 89 self.add_composite_file('neostore.propertystore.db.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 88 self.add_composite_file('neostore.propertystore.db.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 90 self.add_composite_file('neostore.propertystore.db.arrays', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 89 self.add_composite_file('neostore.propertystore.db.arrays', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 91 self.add_composite_file('neostore.propertystore.db.arrays.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 90 self.add_composite_file('neostore.propertystore.db.arrays.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 92 self.add_composite_file('neostore.propertystore.db.index', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 91 self.add_composite_file('neostore.propertystore.db.index', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 93 self.add_composite_file('neostore.propertystore.db.index.id',substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 92 self.add_composite_file('neostore.propertystore.db.index.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 94 self.add_composite_file('neostore.propertystore.db.index.keys', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 93 self.add_composite_file('neostore.propertystore.db.index.keys', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 95 self.add_composite_file('neostore.propertystore.db.index.keys.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 94 self.add_composite_file('neostore.propertystore.db.index.keys.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 96 self.add_composite_file('neostore.propertystore.db.strings', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 95 self.add_composite_file('neostore.propertystore.db.strings', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 97 self.add_composite_file('neostore.propertystore.db.strings.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) | 96 self.add_composite_file('neostore.propertystore.db.strings.id', substitute_name_with_metadata='neostore_propertystore_file', is_binary=True) |
| 98 | 97 |
| 104 self.add_composite_file('neostore.relationshiptypestore.db.names.id', substitute_name_with_metadata='neostore_relationship_type_file', is_binary=True) | 103 self.add_composite_file('neostore.relationshiptypestore.db.names.id', substitute_name_with_metadata='neostore_relationship_type_file', is_binary=True) |
| 105 self.add_composite_file('neostore.schemastore.db', substitute_name_with_metadata='neostore_schema_store_file', is_binary=True) | 104 self.add_composite_file('neostore.schemastore.db', substitute_name_with_metadata='neostore_schema_store_file', is_binary=True) |
| 106 self.add_composite_file('neostore.schemastore.db.id', substitute_name_with_metadata='neostore_schema_store_file', is_binary=True) | 105 self.add_composite_file('neostore.schemastore.db.id', substitute_name_with_metadata='neostore_schema_store_file', is_binary=True) |
| 107 self.add_composite_file('neostore.transaction.db.0', substitute_name_with_metadata='neostore_count_file', is_binary=True) | 106 self.add_composite_file('neostore.transaction.db.0', substitute_name_with_metadata='neostore_count_file', is_binary=True) |
| 108 | 107 |
| 108 | |
| 109 if __name__ == '__main__': | 109 if __name__ == '__main__': |
| 110 import doctest | 110 import doctest |
| 111 | |
| 111 doctest.testmod(sys.modules[__name__]) | 112 doctest.testmod(sys.modules[__name__]) |