diff tools/mothur/macros.xml @ 0:ee4fee239fe7 draft default tip

planemo upload commit 68a4fd4cc5332c57ac39bef73db224425af0706c-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/mothur/macros.xml	Fri Jun 03 09:32:47 2016 -0400
@@ -0,0 +1,42 @@
+<macros>
+    <xml name="requirements">
+        <requirements>
+            <requirement type="package" version="1.36.1">mothur</requirement>
+        </requirements>
+    </xml>
+    <xml name="version_command">
+        <version_command>mothur "#help()" | sed '7q;d' | cut -d" " -f2 </version_command>
+    </xml>
+    <token name="@WRAPPER_VERSION@">1.36.1</token>
+    <token name="@MOTHUR_OVERVIEW@">
+<![CDATA[
+
+**Mothur Overview**
+
+Mothur is a comprehensive suite of tools for microbial ecology community. It is initiated by Dr. Patrick Schloss and his software development team
+in the Department of Microbiology and Immunology at The University of Michigan. For more information, see Mothur-Wiki_.
+
+.. _Mothur-Wiki: http://www.mothur.org/wiki/Main_Page
+
+]]>
+    </token>
+    <xml name="labeloptions">
+        <options>
+            <filter type="data_meta" ref="otu" key="labels"/>
+        </options>
+    </xml>
+    <xml name="logfile-test">
+        <output name="logfile" ftype="txt">
+            <assert_contents>
+                <has_text text="mothur"/>
+                <has_text text="@WRAPPER_VERSION@"/>
+            </assert_contents>
+        </output>
+    </xml>
+    <xml name="citations">
+        <citations>
+            <citation type="doi">10.1128/AEM.01541-09</citation>
+            <yield/>
+        </citations>
+    </xml>
+</macros>