# HG changeset patch
# User sanbi-uwc
# Date 1504777891 14400
# Node ID a269ca0887737dfadcee0dd41831125e92daa694
# Parent  22dc4d7e66bf38fc4d8fc84d8661e60db9dd8c29
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/lofreq commit 1a012a5cc8fc183896e245efc38d3e8dced0e11f

diff -r 22dc4d7e66bf -r a269ca088773 lofreq_call.xml
--- a/lofreq_call.xml	Thu Sep 07 05:29:03 2017 -0400
+++ b/lofreq_call.xml	Thu Sep 07 05:51:31 2017 -0400
@@ -63,7 +63,7 @@
 
         <param name="BaseAlignmentAndIndedAlignment" type="select" display="checkboxes" multiple="true" label="Base-alignment (BAQ) and indel-aligment (IDAQ) qualities Options">
             <option value="--no-baq">Disable use of base-alignment quality (BAQ)</option>
-            <option value="--no-idap">Don't use IDAQ values (NOT recommended under ANY circumstances other than debugging)</option>
+            <option value="--no-idaq">Don't use IDAQ values (NOT recommended under ANY circumstances other than debugging)</option>
             <option value="--del-baq">Delete pre-existing BAQ values, i.e. compute even if already present in BAM</option>
             <option value="--no-ext-baq"> Use 'normal' BAQ (samtools default) instead of extended BAQ (both computed on the fly if not already present in lb tag)</option>
         </param>