# HG changeset patch
# User sanbi-uwc
# Date 1524207158 14400
# Node ID b1584795d565aafe72f5ef5c9407c7db0778a810
# Parent  25b1bbfe9d130aaa844fb47353bce4b8af951f88
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/gatk2 commit c426147a7c2523c9d10934db3a9e7b8b34ab6388

diff -r 25b1bbfe9d13 -r b1584795d565 haplotype_caller.xml
--- a/haplotype_caller.xml	Thu Apr 19 08:25:49 2018 -0400
+++ b/haplotype_caller.xml	Fri Apr 20 02:52:38 2018 -0400
@@ -148,8 +148,8 @@
         <param name="annotation" type="select" multiple="True" display="checkboxes" label="Annotation Types" help="-A,--annotation &amp;lt;annotation&amp;gt;">
           <!-- load the available annotations from an external configuration file, since additional ones can be added to local installs -->
           <options from_data_table="gatk2_annotations">
-            <filter type="multiple_splitter" column="tools_valid_for" separator=","/>
-            <filter type="static_value" value="HaplotypeCaller" column="tools_valid_for"/>
+            <filter type="multiple_splitter" column="3" separator=","/>
+            <filter type="static_value" value="HaplotypeCaller" column="3"/>
           </options>
         </param>
         <repeat name="additional_annotations" title="Additional annotation" help="-A,--annotation &amp;lt;annotation&amp;gt;">
@@ -181,8 +181,8 @@
         <param name="exclude_annotations" type="select" multiple="True" display="checkboxes" label="Annotations to exclude" help="-XA,--excludeAnnotation &amp;lt;excludeAnnotation&amp;gt;" >
           <!-- load the available annotations from an external configuration file, since additional ones can be added to local installs -->
           <options from_data_table="gatk2_annotations">
-            <filter type="multiple_splitter" column="tools_valid_for" separator=","/>
-            <filter type="static_value" value="HaplotypeCaller" column="tools_valid_for"/>
+            <filter type="multiple_splitter" column="3" separator=","/>
+            <filter type="static_value" value="HaplotypeCaller" column="3"/>
           </options>
         </param>