# HG changeset patch
# User sanbi-uwc
# Date 1524432797 14400
# Node ID 55b17de30a360b1e11026b9531f069f04670a27d
# Parent  53f569a8b30b98f526d2a7cca61c36fd1f39f034
planemo upload for repository https://github.com/SANBI-SA/tools-sanbi-uwc/tree/master/tools/freebayes commit ea02998618e68c05a76387f13f935e913d07a5eb

diff -r 53f569a8b30b -r 55b17de30a36 freebayes.xml
--- a/freebayes.xml	Sun Apr 22 17:18:15 2018 -0400
+++ b/freebayes.xml	Sun Apr 22 17:33:17 2018 -0400
@@ -3,10 +3,10 @@
     <macros>
         <import>macros.xml</import>
     </macros>
-    <!--<expand macro="requirements">
+    <expand macro="requirements">
         <requirement type="package" version="4.1.3">gawk</requirement>
         <requirement type="package" version="20170422">parallel</requirement>
-    </expand>-->
+    </expand>
     <command detect_errors="exit_code"><![CDATA[
     ##set up input files
 
@@ -344,7 +344,7 @@
                             <when value="provide_vcf">
                                 <param name="input_variant_vcf" argument="--variant-input" type="data" format="vcf_bgzip"
                                        label="Use variants reported in this VCF dataset as input to the algorithm">
-                                    <conversion name="Tabixized_input" type="tabix" />
+                                    <!--<conversion name="Tabixized_input" type="tabix" />-->
                                 </param>
                                 <param name="only_use_input_alleles" argument="--only-use-input-alleles" type="boolean" truevalue="--only-use-input-alleles" falsevalue="" checked="false"
                                        label="Only provide variant calls and genotype likelihoods for sites in VCF" />