# HG changeset patch
# User sanbi-uwc
# Date 1537214556 14400
# Node ID ec2c5e5215332bebe000d472119ab8b57e5cc3e2
# Parent  78ec8f452966d97823f32801978addd124e31278
planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit 58664d1dbd0725423a50869ecb376f05e59b6449-dirty

diff -r 78ec8f452966 -r ec2c5e521533 bioblend/.nbgrader.log
--- a/bioblend/.nbgrader.log	Mon Sep 17 12:56:35 2018 -0400
+++ b/bioblend/.nbgrader.log	Mon Sep 17 16:02:36 2018 -0400
@@ -23,3 +23,4 @@
 [NotebookApp | INFO] Saving file at /Untitled.ipynb
 [NotebookApp | INFO] Saving file at /Untitled.ipynb
 [NotebookApp | INFO] Saving file at /Untitled.ipynb
+[NotebookApp | INFO] Starting buffering for 80389481-149c-4b52-9ae8-fa1b81e1ca1b:8df5e156c9b94abc8d2818315546f1cf
diff -r 78ec8f452966 -r ec2c5e521533 data_manager/shapeit_ref.xml
--- a/data_manager/shapeit_ref.xml	Mon Sep 17 12:56:35 2018 -0400
+++ b/data_manager/shapeit_ref.xml	Mon Sep 17 16:02:36 2018 -0400
@@ -1,4 +1,4 @@
-<tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.7">
+<tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.8">
     <command detect_errors="exit_code"><![CDATA[
     python $__tool_directory__/shapeit_ref.py
         '${value}'
diff -r 78ec8f452966 -r ec2c5e521533 tool-data/shapeit_ref.loc.sample
--- a/tool-data/shapeit_ref.loc.sample	Mon Sep 17 12:56:35 2018 -0400
+++ b/tool-data/shapeit_ref.loc.sample	Mon Sep 17 16:02:36 2018 -0400
@@ -1,6 +1,6 @@
 #This file lists the locations of SHAPEIT reference data connections
 #
-#<value>	<description>	<path>	<reference_file_prefix>	<map_file_prefix>	<sample_file_prefix>
+#<value>	<name>	<path>	<reference_file_prefix>	<map_file_prefix>	<sample_file_prefix>
 #
 #For example
 #
diff -r 78ec8f452966 -r ec2c5e521533 tool_data_table_conf.xml.sample
--- a/tool_data_table_conf.xml.sample	Mon Sep 17 12:56:35 2018 -0400
+++ b/tool_data_table_conf.xml.sample	Mon Sep 17 16:02:36 2018 -0400
@@ -1,6 +1,6 @@
 <tables>
-    <table name="shapeit_ref" comment_char="#">
-        <columns>value, name, path, reference_prefix, map_prefix</columns>
+    <table name="shapeit_ref2" comment_char="#">
+        <columns>value, name, path, reference_prefix, map_prefix, sample_prefix</columns>
         <file path="tool-data/shapeit_ref.loc" />
     </table>
 </tables>