comparison data_manager/shapeit_ref.xml @ 5:f0c7cab2f547 draft

planemo upload for repository https://github.com/pvanheus/data_manager_shapeit_reference commit 1e78071ffc35990e3ea5846a6cc07e194f886cf0

4:094bd0114876

<tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.5">
    <command detect_errors="aggressive"><![CDATA[
    python $__tool_directory__/shapeit_ref.py
        '${value}'
        '${name}'
        '${path}'
        '${reference_prefix}'
        '${map_prefix}'
        '${output_file}'
    ]]></command>>
    <inputs>
        <param name="value" type="text" label="Short key to identify this reference set (no spaces)" />
        <param name="name" type="text" label="Description of the reference data" />
        <param name="path" type="text" label="Filesystem path to directory containing this reference set" />
        <param name="reference_prefix" type="text" label="Filename prefix for the reference (.hap / .legend / .sample) files" />
        <param name="map_prefix" type="text" label="Filename prefix for map files in this reference set" />
    </inputs>
    <outputs>
        <data name="output_file" format="data_manager_json" />
    </outputs>
    <help><![CDATA[

5:f0c7cab2f547

<tool id="shapeit_reference_manager" name="SHAPEIT reference data path manager" tool_type="manage_data" version="0.0.6">
    <command detect_errors="exit_code"><![CDATA[
    python $__tool_directory__/shapeit_ref.py
        '${value}'
        '${name}'
        '${path}'
        '${reference_prefix}'
        '${map_prefix}'
        '${sample_prefix}'
        '${output_file}'
    ]]></command>>
    <inputs>
        <param name="value" type="text" label="Short key to identify this reference set (no spaces)" />
        <param name="name" type="text" label="Description of the reference data" />
        <param name="path" type="text" label="Filesystem path to directory containing this reference set" />
        <param name="reference_prefix" type="text" label="Filename prefix for the reference (.hap / .legend / .sample) files" />
        <param name="map_prefix" type="text" label="Filename prefix for map files in this reference set" />
        <param name="sample_prefix" type="text" label="Filename prefix for sample file for this reference set">
    </inputs>
    <outputs>
        <data name="output_file" format="data_manager_json" />
    </outputs>
    <help><![CDATA[